Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012048A_C01 KMC012048A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA00352.1| ebiP8846 [Anopheles gambiae str. PEST] 33 3.0
ref|NP_054730.1| suppressor of cytokine signaling 5; cytokine-in... 32 5.2
ref|XP_237483.1| similar to suppressor of cytokine signaling 5; ... 32 5.2
ref|NP_062628.1| suppressor of cytokine signaling 5; Socs-5; cyt... 32 5.2
ref|XP_237484.1| similar to suppressor of cytokine signaling 5; ... 32 5.2
>gb|EAA00352.1| ebiP8846 [Anopheles gambiae str. PEST]
Length = 1046
Score = 32.7 bits (73), Expect = 3.0
Identities = 16/35 (45%), Positives = 21/35 (59%)
Frame = -3
Query: 488 SCLHREFDITLSSILGAGNYGWGIRSQHHCPKNQL 384
+CL E D+TLS LG G++G R + H P N L
Sbjct: 108 TCLIHEKDVTLSVKLGDGSFGVVRRGEWHAPGNHL 142
>ref|NP_054730.1| suppressor of cytokine signaling 5; cytokine-inducible SH2 protein
6 [Homo sapiens] gi|21618354|ref|NP_659198.1| suppressor
of cytokine signaling 5; cytokine-inducible SH2 protein
6 [Homo sapiens] gi|20178102|sp|O75159|SOC5_HUMAN
Cytokine inducible SH2-containing protein 5 (Suppressor
of cytokine signaling 5) (SOCS-5) (Cytokine-inducible
SH2 protein 6) (CIS-6) gi|11359944|pir||T46499
hypothetical protein DKFZp434C198.1 - human
gi|3327156|dbj|BAA31646.1| KIAA0671 protein [Homo
sapiens] gi|5162955|gb|AAD40484.1|AF073958_1
cytokine-inducible SH2 protein 6 [Homo sapiens]
gi|6807675|emb|CAB66830.1| hypothetical protein [Homo
sapiens]
Length = 536
Score = 32.0 bits (71), Expect = 5.2
Identities = 13/31 (41%), Positives = 21/31 (66%)
Frame = +3
Query: 51 KHEMPTNPTSTFNNEHGPSIINKKDLEDQLR 143
+H P +P STF + PS+++ +D ED+LR
Sbjct: 235 QHTAPVSPHSTFFDTFDPSLVSTEDEEDRLR 265
>ref|XP_237483.1| similar to suppressor of cytokine signaling 5; Socs-5; cytokine
inducible SH2-containing protein 5 [Mus musculus]
[Rattus norvegicus]
Length = 530
Score = 32.0 bits (71), Expect = 5.2
Identities = 13/31 (41%), Positives = 21/31 (66%)
Frame = +3
Query: 51 KHEMPTNPTSTFNNEHGPSIINKKDLEDQLR 143
+H P +P STF + PS+++ +D ED+LR
Sbjct: 229 QHTAPVSPHSTFFDTFDPSLVSTEDEEDRLR 259
>ref|NP_062628.1| suppressor of cytokine signaling 5; Socs-5; cytokine inducible
SH2-containing protein 5 [Mus musculus]
gi|20178101|sp|O54928|SOC5_MOUSE Cytokine inducible
SH2-containing protein 5 (Suppressor of cytokine
signaling 5) (SOCS-5) gi|2766491|gb|AAB96648.1| SOCS-5
[Mus musculus]
Length = 536
Score = 32.0 bits (71), Expect = 5.2
Identities = 13/31 (41%), Positives = 21/31 (66%)
Frame = +3
Query: 51 KHEMPTNPTSTFNNEHGPSIINKKDLEDQLR 143
+H P +P STF + PS+++ +D ED+LR
Sbjct: 235 QHTAPVSPHSTFFDTFDPSLVSTEDEEDRLR 265
>ref|XP_237484.1| similar to suppressor of cytokine signaling 5; Socs-5; cytokine
inducible SH2-containing protein 5 [Mus musculus]
[Rattus norvegicus]
Length = 536
Score = 32.0 bits (71), Expect = 5.2
Identities = 13/31 (41%), Positives = 21/31 (66%)
Frame = +3
Query: 51 KHEMPTNPTSTFNNEHGPSIINKKDLEDQLR 143
+H P +P STF + PS+++ +D ED+LR
Sbjct: 235 QHTAPVSPHSTFFDTFDPSLVSTEDEEDRLR 265
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,587,834
Number of Sequences: 1393205
Number of extensions: 11214162
Number of successful extensions: 22850
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 22272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22846
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
