Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012040A_C01 KMC012040A_c01
(654 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06329 symbiotic ammonium transport protein SAT1 - soybean ... 41 3e-07
gb|AAM10935.1|AF488563_1 putative bHLH transcription factor [Ara... 39 4e-05
ref|NP_179862.2| putative bHLH transcription factor; protein id:... 40 9e-05
ref|NP_195498.2| bHLH protein; protein id: At4g37850.1, supporte... 37 1e-04
pir||F84616 probable bHLH transcription factor [imported] - Arab... 40 0.028
>pir||T06329 symbiotic ammonium transport protein SAT1 - soybean
gi|3399777|gb|AAC32828.1| symbiotic ammonium
transporter; nodulin [Glycine max]
Length = 347
Score = 41.2 bits (95), Expect(2) = 3e-07
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = -2
Query: 653 LIRIPCEKQEGVLMNILKEIHNLNLSVINAGTLLFGT 543
LIRI CEK +GV+ + EI L+L VIN+ L FG+
Sbjct: 277 LIRIHCEKNKGVIEKTISEIEKLHLKVINSSALTFGS 313
Score = 35.0 bits (79), Expect(2) = 3e-07
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = -3
Query: 532 DITIIAEMDDGFXLSVKELARKLRVGLSQFM 440
DITIIA+MD F ++VK+L R LR S F+
Sbjct: 317 DITIIAQMDMEFCMTVKDLVRSLRSAFSYFV 347
>gb|AAM10935.1|AF488563_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 295
Score = 39.3 bits (90), Expect(2) = 4e-05
Identities = 20/40 (50%), Positives = 25/40 (62%)
Frame = -2
Query: 653 LIRIPCEKQEGVLMNILKEIHNLNLSVINAGTLLFGTSKL 534
LIRI CEK +G ++NIL I N L + N+ L FG S L
Sbjct: 227 LIRILCEKSKGCMINILNTIENFQLRIENSIVLPFGDSTL 266
Score = 29.6 bits (65), Expect(2) = 4e-05
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -3
Query: 547 GPPNWDITIIAEMDDGFXLSV-KELARKLR 461
G DIT++A+MD F +S+ K+L R LR
Sbjct: 262 GDSTLDITVLAQMDKDFSMSILKDLVRNLR 291
>ref|NP_179862.2| putative bHLH transcription factor; protein id: At2g22770.1,
supported by cDNA: gi_20127017 [Arabidopsis thaliana]
gi|20127018|gb|AAM10936.1| putative bHLH transcription
factor [Arabidopsis thaliana]
Length = 320
Score = 40.0 bits (92), Expect(2) = 9e-05
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = -2
Query: 653 LIRIPCEKQEGVLMNILKEIHNLNLSVINAGTLLFGTSKL 534
LIR+ CEK +G ++ IL + L V+N+ TL FG S L
Sbjct: 252 LIRVHCEKNKGCMIKILSSLEKFRLEVVNSFTLPFGNSTL 291
Score = 27.7 bits (60), Expect(2) = 9e-05
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -3
Query: 529 ITIIAEMDDGFXLSVKELARKLRVGLSQ 446
ITI+ +MD+ F V+E+ + +RV L++
Sbjct: 293 ITILTKMDNKFSRPVEEVVKNIRVALAE 320
>ref|NP_195498.2| bHLH protein; protein id: At4g37850.1, supported by cDNA:
gi_20127021 [Arabidopsis thaliana]
gi|20127022|gb|AAM10937.1| putative bHLH transcription
factor [Arabidopsis thaliana]
Length = 304
Score = 36.6 bits (83), Expect(2) = 1e-04
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = -2
Query: 653 LIRIPCEKQEGVLMNILKEIHNLNLSVINAGTLLFG 546
LI+I CEKQ+G L I+ EI L++ + N+ L FG
Sbjct: 235 LIKILCEKQKGHLAKIMAEIEKLHILITNSSVLNFG 270
Score = 30.8 bits (68), Expect(2) = 1e-04
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -3
Query: 541 PNWDITIIAEMDDGFXLSVKELARKLRVGLSQFM 440
P DITIIA+ + F +++ ++ + LR LS F+
Sbjct: 271 PTLDITIIAKKESDFDMTLMDVVKSLRSALSNFI 304
>pir||F84616 probable bHLH transcription factor [imported] - Arabidopsis
thaliana gi|3738091|gb|AAC63588.1| putative bHLH
transcription factor [Arabidopsis thaliana]
Length = 322
Score = 40.0 bits (92), Expect = 0.028
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = -2
Query: 653 LIRIPCEKQEGVLMNILKEIHNLNLSVINAGTLLFGTSKL 534
LIR+ CEK +G ++ IL + L V+N+ TL FG S L
Sbjct: 252 LIRVHCEKNKGCMIKILSSLEKFRLEVVNSFTLPFGNSTL 291
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 550,800,982
Number of Sequences: 1393205
Number of extensions: 11380559
Number of successful extensions: 17997
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17997
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
