Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012030A_C01 KMC012030A_c01
(617 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_492308.1| Ankyrin repeat containing protein [Caenorhabdit... 36 0.35
gb|AAK00650.1|AF227194_1 zinc finger protein TZF-L [Mus musculus] 35 0.60
gb|EAA11921.1| agCP5773 [Anopheles gambiae str. PEST] 35 0.60
ref|XP_207031.1| similar to cain [Rattus norvegicus] [Mus musculus] 35 0.78
ref|NP_766137.1| RIKEN cDNA A330070M20; hypothetical protein A33... 35 0.78
>ref|NP_492308.1| Ankyrin repeat containing protein [Caenorhabditis elegans]
gi|7505108|pir||T23222 hypothetical protein K02B12.5 -
Caenorhabditis elegans gi|3878162|emb|CAB00035.1|
Hypothetical protein K02B12.5 [Caenorhabditis elegans]
Length = 1208
Score = 36.2 bits (82), Expect = 0.35
Identities = 33/144 (22%), Positives = 56/144 (37%), Gaps = 20/144 (13%)
Frame = +2
Query: 194 HLRFTEKRKETVVSISHLVSFPPPC-------FHGEETK-------------ETSNQKSK 313
HL+F E K + V+ PPP H EE +++K +
Sbjct: 703 HLKFAENLKILTANYKAPVNIPPPHPINRIPRIHQEEEDIPPDDVEDGMIYAMAASRKRR 762
Query: 314 KVERKDKKTAAGKEKQRWECDMLPLLILPPPPLSN*RKKSALLLLSGQICTSSPREDKKK 493
D + K KQR E ++ P PP + RK+ L+ + TS + +
Sbjct: 763 NSNNSDNSSNTSKRKQRSEENIKPPNSTPPTTAHSNRKR----LVQPSLITSKRVQRQNS 818
Query: 494 SMFTSSNPDSNLEKKARVNSTLEV 565
S +SNP +++ + ++ T V
Sbjct: 819 SSSLTSNPRNSISPRRSISPTTTV 842
>gb|AAK00650.1|AF227194_1 zinc finger protein TZF-L [Mus musculus]
Length = 2025
Score = 35.4 bits (80), Expect = 0.60
Identities = 25/88 (28%), Positives = 40/88 (45%)
Frame = +2
Query: 335 KTAAGKEKQRWECDMLPLLILPPPPLSN*RKKSALLLLSGQICTSSPREDKKKSMFTSSN 514
+TA G + W+ ++ +L+ PPPPLS+ + A L C ++ +F SS
Sbjct: 1338 ETAPGVSESDWDQTLISMLVRPPPPLSSVFSEQAKKLEKRNSCLATANAKDLYDIFYSSG 1397
Query: 515 PDSNLEKKARVNSTLEVGGRREGSRSEA 598
E K +STL G R+E+
Sbjct: 1398 GKGAHETKLS-SSTLANGESSSLPRTES 1424
>gb|EAA11921.1| agCP5773 [Anopheles gambiae str. PEST]
Length = 497
Score = 35.4 bits (80), Expect = 0.60
Identities = 25/62 (40%), Positives = 30/62 (48%)
Frame = +1
Query: 256 STSMLPWGGDQGDLQPKIQESGKKRQKDSRGKGKATLGM*HASIVDSSSSSSLQLKKKIC 435
+TS +P G+ Q SG + KDS GKAT HA+ SSSSSS K
Sbjct: 66 ATSQMPTESGAGEKSDTPQPSGSEESKDS-ANGKATAD--HATSSSSSSSSSSSSSSKGV 122
Query: 436 PP 441
PP
Sbjct: 123 PP 124
>ref|XP_207031.1| similar to cain [Rattus norvegicus] [Mus musculus]
Length = 586
Score = 35.0 bits (79), Expect = 0.78
Identities = 30/108 (27%), Positives = 46/108 (41%), Gaps = 6/108 (5%)
Frame = +2
Query: 260 PPCFHGEETKETSNQKSKKVERKDKKTAAGKEKQRWECDMLPLLILP------PPPLSN* 421
P C TK S+ ++ E KT + + K R +M P L++P PP ++
Sbjct: 459 PTCSQASSTKVPSSGSTQTAESHQGKTESSRAKSRLLPNM-PKLVIPSATTKSPPEITVT 517
Query: 422 RKKSALLLLSGQICTSSPREDKKKSMFTSSNPDSNLEKKARVNSTLEV 565
LL G I S + K KS S+ +N+ K++ LEV
Sbjct: 518 PPTPTLLSPKGSI--SEETKQKLKSAILSAQSAANVRKESLCQPALEV 563
>ref|NP_766137.1| RIKEN cDNA A330070M20; hypothetical protein A330070M20 [Mus
musculus] gi|26347301|dbj|BAC37299.1| unnamed protein
product [Mus musculus]
Length = 504
Score = 35.0 bits (79), Expect = 0.78
Identities = 30/108 (27%), Positives = 46/108 (41%), Gaps = 6/108 (5%)
Frame = +2
Query: 260 PPCFHGEETKETSNQKSKKVERKDKKTAAGKEKQRWECDMLPLLILP------PPPLSN* 421
P C TK S+ ++ E KT + + K R +M P L++P PP ++
Sbjct: 377 PTCSQASSTKVPSSGSTQTAESHQGKTESSRAKSRLLPNM-PKLVIPSATTKSPPEITVT 435
Query: 422 RKKSALLLLSGQICTSSPREDKKKSMFTSSNPDSNLEKKARVNSTLEV 565
LL G I S + K KS S+ +N+ K++ LEV
Sbjct: 436 PPTPTLLSPKGSI--SEETKQKLKSAILSAQSAANVRKESLCQPALEV 481
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 602,396,919
Number of Sequences: 1393205
Number of extensions: 14378231
Number of successful extensions: 51500
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 47439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51287
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
