Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012028A_C01 KMC012028A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680171.1| similar to reverse transcriptase, putative; pro... 38 0.083
gb|AAM91869.1| hypothetical protein [Oryza sativa (japonica cult... 37 0.18
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ... 36 0.31
dbj|BAC55773.1| OSJNBb0041J06.18 [Oryza sativa (japonica cultiva... 33 2.0
ref|NP_199260.1| putative protein; protein id: At5g44470.1 [Arab... 32 5.9
>ref|NP_680171.1| similar to reverse transcriptase, putative; protein id: At5g17725.1
[Arabidopsis thaliana]
Length = 721
Score = 38.1 bits (87), Expect = 0.083
Identities = 23/71 (32%), Positives = 37/71 (51%)
Frame = -1
Query: 557 WMLQSNQMEMVFGAIIRNKEGLTMAAATKKA*AQGDSIMAEAMGVQWALEWTRQLGFTQI 378
W +S++ + G I+R+ G +K + S+ AEA + WA+ LG T++
Sbjct: 573 WKAESDRCGV--GWILRDATGAAKWVGSKAYPSLVSSLEAEATALTWAMRCLDNLGVTEV 630
Query: 377 SLETDSLVLVQ 345
ETDS VLV+
Sbjct: 631 VFETDSQVLVK 641
>gb|AAM91869.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 243
Score = 37.0 bits (84), Expect = 0.18
Identities = 22/67 (32%), Positives = 31/67 (45%)
Frame = -1
Query: 524 FGAIIRNKEGLTMAAATKKA*AQGDSIMAEAMGVQWALEWTRQLGFTQISLETDSLVLVQ 345
+G +IR+ + A + D+ AE M L+ LG I LE+DSL L+Q
Sbjct: 103 WGYVIRDVGAHVIQAGAGSSSRMQDAFHAEVMAGVKGLQAAANLGMANIQLESDSLTLIQ 162
Query: 344 QWRNNNF 324
R NF
Sbjct: 163 ALREENF 169
>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 36.2 bits (82), Expect = 0.31
Identities = 22/73 (30%), Positives = 38/73 (51%)
Frame = -1
Query: 545 SNQMEMVFGAIIRNKEGLTMAAATKKA*AQGDSIMAEAMGVQWALEWTRQLGFTQISLET 366
SN + +G +IR++ G + A A D+ AE + A++ + G ++I LET
Sbjct: 1391 SNMKQGGWGFVIRDQTGAVLQAGAGPAAYLQDAFHAEVVACAAAIKTASERGMSRIELET 1450
Query: 365 DSLVLVQQWRNNN 327
DS++L R+ N
Sbjct: 1451 DSMMLRYSPRSCN 1463
>dbj|BAC55773.1| OSJNBb0041J06.18 [Oryza sativa (japonica cultivar-group)]
Length = 185
Score = 33.5 bits (75), Expect = 2.0
Identities = 20/67 (29%), Positives = 35/67 (51%)
Frame = -1
Query: 548 QSNQMEMVFGAIIRNKEGLTMAAATKKA*AQGDSIMAEAMGVQWALEWTRQLGFTQISLE 369
Q+N+ +G ++R++EG + A + D + AEA AL G T++ +E
Sbjct: 36 QANRKTGGWGFVLRDEEGHALLAGAGRLEFVHDVVSAEARACLSALLAISVQGVTEVEIE 95
Query: 368 TDSLVLV 348
+DS +LV
Sbjct: 96 SDSAILV 102
>ref|NP_199260.1| putative protein; protein id: At5g44470.1 [Arabidopsis thaliana]
gi|9758700|dbj|BAB09154.1|
gb|AAF30348.1~gene_id:MFC16.13~similar to unknown
protein [Arabidopsis thaliana]
Length = 108
Score = 32.0 bits (71), Expect = 5.9
Identities = 17/59 (28%), Positives = 29/59 (48%)
Frame = -1
Query: 521 GAIIRNKEGLTMAAATKKA*AQGDSIMAEAMGVQWALEWTRQLGFTQISLETDSLVLVQ 345
G IIRN G M K + +E + WAL+ + LG+ +I + D+L +++
Sbjct: 35 GWIIRNSHGTFMECGMSKFQGRAPVEESECTALIWALQSSWNLGYIKIEFDGDNLSIIR 93
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,043,760
Number of Sequences: 1393205
Number of extensions: 11596155
Number of successful extensions: 24656
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 24017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24641
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
