Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011999A_C01 KMC011999A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65243.1| putative carboxyl-terminal peptidase [Arabidopsis... 74 1e-19
ref|NP_566457.1| expressed protein; protein id: At3g13510.1, sup... 74 1e-19
ref|NP_179607.1| hypothetical protein; protein id: At2g20170.1 [... 74 2e-19
dbj|BAC42647.1| unknown protein [Arabidopsis thaliana] gi|289509... 68 4e-19
ref|NP_175933.1| unknown protein; protein id: At1g55360.1 [Arabi... 69 8e-18
>gb|AAM65243.1| putative carboxyl-terminal peptidase [Arabidopsis thaliana]
Length = 419
Score = 73.6 bits (179), Expect(2) = 1e-19
Identities = 33/75 (44%), Positives = 51/75 (68%)
Frame = +3
Query: 33 TEEKLE*ERQLKHINTPPIVTINTT*GYIVDCVDIKKQPAFDHPLLKNHKLQLKPSFQNI 212
+ +K E ++ L +N PP+ TI + G I+DC+ I KQPAFDHP LK+HK+Q++PS+ +
Sbjct: 35 SRQKFEVKKHLNRLNKPPVKTIQSPDGDIIDCIPISKQPAFDHPFLKDHKIQMRPSY-HP 93
Query: 213 MGKADEKNISAKVMG 257
G D+ +SA+ G
Sbjct: 94 EGLFDDNKVSAEPKG 108
Score = 43.9 bits (102), Expect(2) = 1e-19
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Frame = +1
Query: 247 KLWDLGLRKDQCPVGTVPMRRTTKDDLIRGKSLFTY--------PI*TTGQP-----GTH 387
+LW R +C GT+PMRRT +DD++R S+ Y PI + +P H
Sbjct: 115 QLWH---RYGKCTEGTIPMRRTREDDVLRASSVKRYGKKKHRSVPIPKSAEPDLINQNGH 171
Query: 388 IAEVSYGPFGFKRVYGASGSGSLWNPKVKH-DQTSNSHMW 504
++Y + YGA + ++W PK+++ ++ S S +W
Sbjct: 172 QHAIAY--VEGDKYYGAKATLNVWEPKIQNTNEFSLSQIW 209
>ref|NP_566457.1| expressed protein; protein id: At3g13510.1, supported by cDNA:
37810., supported by cDNA: gi_18700164 [Arabidopsis
thaliana] gi|9280303|dbj|BAB01758.1|
gb|AAC16072.1~gene_id:MRP15.17~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|18700165|gb|AAL77694.1| AT3g13510/MRP15_15
[Arabidopsis thaliana] gi|24797030|gb|AAN64527.1|
At3g13510/MRP15_15 [Arabidopsis thaliana]
Length = 419
Score = 73.6 bits (179), Expect(2) = 1e-19
Identities = 33/75 (44%), Positives = 51/75 (68%)
Frame = +3
Query: 33 TEEKLE*ERQLKHINTPPIVTINTT*GYIVDCVDIKKQPAFDHPLLKNHKLQLKPSFQNI 212
+ +K E ++ L +N PP+ TI + G I+DC+ I KQPAFDHP LK+HK+Q++PS+ +
Sbjct: 35 SRQKFEVKKHLNRLNKPPVKTIQSPDGDIIDCIPISKQPAFDHPFLKDHKIQMRPSY-HP 93
Query: 213 MGKADEKNISAKVMG 257
G D+ +SA+ G
Sbjct: 94 EGLFDDNKVSAEPKG 108
Score = 43.9 bits (102), Expect(2) = 1e-19
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Frame = +1
Query: 247 KLWDLGLRKDQCPVGTVPMRRTTKDDLIRGKSLFTY--------PI*TTGQP-----GTH 387
+LW R +C GT+PMRRT +DD++R S+ Y PI + +P H
Sbjct: 115 QLWH---RYGKCTEGTIPMRRTREDDVLRASSVKRYGKKKHRSVPIPKSAEPDLINQNGH 171
Query: 388 IAEVSYGPFGFKRVYGASGSGSLWNPKVKH-DQTSNSHMW 504
++Y + YGA + ++W PK+++ ++ S S +W
Sbjct: 172 QHAIAY--VEGDKYYGAKATLNVWEPKIQNTNEFSLSQIW 209
>ref|NP_179607.1| hypothetical protein; protein id: At2g20170.1 [Arabidopsis
thaliana] gi|25345701|pir||H84585 hypothetical protein
At2g20170 [imported] - Arabidopsis thaliana
gi|4580457|gb|AAD24381.1| hypothetical protein
[Arabidopsis thaliana]
Length = 401
Score = 74.3 bits (181), Expect(2) = 2e-19
Identities = 37/67 (55%), Positives = 47/67 (69%), Gaps = 1/67 (1%)
Frame = +3
Query: 3 LATELRACVQTE-EKLE*ERQLKHINTPPIVTINTT*GYIVDCVDIKKQPAFDHPLLKNH 179
L TE R + + EK E ++ L HIN P I + T GYI+DC+DI+KQ AFDHPLLKNH
Sbjct: 19 LVTESRRTIPLKNEKQELKKLLNHINKPAIKSFQTKHGYILDCIDIQKQLAFDHPLLKNH 78
Query: 180 KLQLKPS 200
+QLKP+
Sbjct: 79 SIQLKPT 85
Score = 42.7 bits (99), Expect(2) = 2e-19
Identities = 31/88 (35%), Positives = 45/88 (50%), Gaps = 11/88 (12%)
Frame = +1
Query: 259 LGLRKDQ---CPVGTVPMRRTTKDDLIRGKSLFTYPI*TT--------GQPGTHIAEVSY 405
L R+D+ CP GTV ++RTT +DLI+ + L + T G H A Y
Sbjct: 102 LPFRQDEDISCPHGTVIIKRTTLEDLIQIQRLKYLGVKYTTSKDKDFLNMTGRHFAIAEY 161
Query: 406 GPFGFKRVYGASGSGSLWNPKVKHDQTS 489
++ YGA+G+ +LW+P V DQ S
Sbjct: 162 ----YRDNYGATGNINLWDPPVNPDQFS 185
>dbj|BAC42647.1| unknown protein [Arabidopsis thaliana] gi|28950971|gb|AAO63409.1|
At4g23390 [Arabidopsis thaliana]
Length = 401
Score = 67.8 bits (164), Expect(2) = 4e-19
Identities = 30/55 (54%), Positives = 41/55 (74%)
Frame = +3
Query: 36 EEKLE*ERQLKHINTPPIVTINTT*GYIVDCVDIKKQPAFDHPLLKNHKLQLKPS 200
EEK E ++ L ++N P + + T GYI DC+DI+KQ AFDHPLLKNH ++LKP+
Sbjct: 32 EEKEEMKKLLTYLNKPAVKSFQTEHGYIFDCIDIQKQLAFDHPLLKNHSIKLKPT 86
Score = 47.8 bits (112), Expect(2) = 4e-19
Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Frame = +1
Query: 247 KLWDLGLRKDQ--CPVGTVPMRRTTKDDLIRGKSL----FTYPI*TTGQP------GTHI 390
K L R+D CPVGTV ++R +DLIR + L F YP + + G H
Sbjct: 100 KTSSLPFRQDDISCPVGTVIVKRIILEDLIRAQRLQSLRFNYPGQVSAKDKKIDLTGHHF 159
Query: 391 AEVSYGPFGFKRVYGASGSGSLWNPKVKHDQTSNSHM 501
A +SY YGA G+ ++WNP V DQ S + M
Sbjct: 160 ATISYKDDH----YGAKGNINVWNPNVSPDQFSLAAM 192
>ref|NP_175933.1| unknown protein; protein id: At1g55360.1 [Arabidopsis thaliana]
gi|25345698|pir||H96595 unknown protein, 9920-11896
[imported] - Arabidopsis thaliana
gi|12323166|gb|AAG51562.1|AC027034_8 unknown protein;
9920-11896 [Arabidopsis thaliana]
gi|24417260|gb|AAN60240.1| unknown [Arabidopsis
thaliana]
Length = 422
Score = 68.6 bits (166), Expect(2) = 8e-18
Identities = 30/71 (42%), Positives = 50/71 (70%)
Frame = +3
Query: 33 TEEKLE*ERQLKHINTPPIVTINTT*GYIVDCVDIKKQPAFDHPLLKNHKLQLKPSFQNI 212
+++K E ++ L +N P + +I ++ G ++DCV I KQPAFDHP LK+HK+Q+KP++ +
Sbjct: 37 SKQKFEVKKHLNRLNKPAVKSIQSSDGDVIDCVPISKQPAFDHPFLKDHKIQMKPNY-HP 95
Query: 213 MGKADEKNISA 245
G D+ +SA
Sbjct: 96 EGLFDDNKVSA 106
Score = 42.7 bits (99), Expect(2) = 8e-18
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 14/100 (14%)
Frame = +1
Query: 247 KLWDLGLRKDQCPVGTVPMRRTTKDDLIRGKSLFTY--------PI*TTGQP-----GTH 387
+LW R +C GT+PMRRT +DD++R S+ Y P+ + +P H
Sbjct: 118 QLWH---RYGKCSEGTIPMRRTKEDDVLRASSVKRYGKKKRRSVPLPKSAEPDLINQSGH 174
Query: 388 IAEVSYGPFGFKRVYGASGSGSLWNPKV-KHDQTSNSHMW 504
++Y + YGA + ++W PK+ + ++ S S +W
Sbjct: 175 QHAIAY--VEGDKYYGAKATINVWEPKIQQQNEFSLSQIW 212
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,366,815
Number of Sequences: 1393205
Number of extensions: 8914202
Number of successful extensions: 19423
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 18842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19396
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
