Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011985A_C01 KMC011985A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO41873.1| unknown protein [Arabidopsis thaliana] gi|2882727... 107 9e-23
ref|NP_178037.1| hypothetical protein; protein id: At1g79160.1 [... 107 9e-23
pir||T01040 hypothetical protein YUP8H12R.23 - Arabidopsis thali... 107 9e-23
ref|NP_563999.1| expressed protein; protein id: At1g16500.1, sup... 95 8e-19
emb|CAB55392.1| zwh0008.1 [Oryza sativa (indica cultivar-group)] 72 4e-12
>gb|AAO41873.1| unknown protein [Arabidopsis thaliana] gi|28827270|gb|AAO50479.1|
unknown protein [Arabidopsis thaliana]
Length = 239
Score = 107 bits (268), Expect = 9e-23
Identities = 63/137 (45%), Positives = 83/137 (59%), Gaps = 6/137 (4%)
Frame = -1
Query: 600 NLFYDTSLDLKLVSYSL---P*SNHYESVCTLDKVKSALERAEKEPAILRKRASSSSYLS 430
NLF DT+ +LKL+ S P +++ +SVCTLDKVKSALERAE++PA+ +KR S +
Sbjct: 122 NLFDDTTPELKLLPSSRSSRPNTSNLQSVCTLDKVKSALERAERDPAMFKKRQSPDDTVY 181
Query: 429 SSPSASFSSSSSSIITQAEEECEVKILASPVATGCPGCLTYVLVTKNNPKCPRSNTNVPF 250
+ + +ASPV GCPGCL+YVLV NNPKCPR +T VP
Sbjct: 182 -------------------DHYRTEAVASPVVAGCPGCLSYVLVMMNNPKCPRCDTIVPL 222
Query: 249 ---RLMKKPRPDLNLSI 208
+ KKP+ DLN+SI
Sbjct: 223 PTNPMKKKPKIDLNISI 239
>ref|NP_178037.1| hypothetical protein; protein id: At1g79160.1 [Arabidopsis
thaliana]
Length = 235
Score = 107 bits (268), Expect = 9e-23
Identities = 63/137 (45%), Positives = 83/137 (59%), Gaps = 6/137 (4%)
Frame = -1
Query: 600 NLFYDTSLDLKLVSYSL---P*SNHYESVCTLDKVKSALERAEKEPAILRKRASSSSYLS 430
NLF DT+ +LKL+ S P +++ +SVCTLDKVKSALERAE++PA+ +KR S +
Sbjct: 118 NLFDDTTPELKLLPSSRSSRPNTSNLQSVCTLDKVKSALERAERDPAMFKKRQSPDDTVY 177
Query: 429 SSPSASFSSSSSSIITQAEEECEVKILASPVATGCPGCLTYVLVTKNNPKCPRSNTNVPF 250
+ + +ASPV GCPGCL+YVLV NNPKCPR +T VP
Sbjct: 178 -------------------DHYRTEAVASPVVAGCPGCLSYVLVMMNNPKCPRCDTIVPL 218
Query: 249 ---RLMKKPRPDLNLSI 208
+ KKP+ DLN+SI
Sbjct: 219 PTNPMKKKPKIDLNISI 235
>pir||T01040 hypothetical protein YUP8H12R.23 - Arabidopsis thaliana
gi|3152565|gb|AAC17046.1| EST gb|N65759 comes from this
gene. [Arabidopsis thaliana]
Length = 204
Score = 107 bits (268), Expect = 9e-23
Identities = 63/137 (45%), Positives = 83/137 (59%), Gaps = 6/137 (4%)
Frame = -1
Query: 600 NLFYDTSLDLKLVSYSL---P*SNHYESVCTLDKVKSALERAEKEPAILRKRASSSSYLS 430
NLF DT+ +LKL+ S P +++ +SVCTLDKVKSALERAE++PA+ +KR S +
Sbjct: 87 NLFDDTTPELKLLPSSRSSRPNTSNLQSVCTLDKVKSALERAERDPAMFKKRQSPDDTVY 146
Query: 429 SSPSASFSSSSSSIITQAEEECEVKILASPVATGCPGCLTYVLVTKNNPKCPRSNTNVPF 250
+ + +ASPV GCPGCL+YVLV NNPKCPR +T VP
Sbjct: 147 -------------------DHYRTEAVASPVVAGCPGCLSYVLVMMNNPKCPRCDTIVPL 187
Query: 249 ---RLMKKPRPDLNLSI 208
+ KKP+ DLN+SI
Sbjct: 188 PTNPMKKKPKIDLNISI 204
>ref|NP_563999.1| expressed protein; protein id: At1g16500.1, supported by cDNA:
109912. [Arabidopsis thaliana] gi|25333061|pir||E86300
protein F3O9.30 [imported] - Arabidopsis thaliana
gi|4966370|gb|AAD34701.1|AC006341_29 >F3O9.30
[Arabidopsis thaliana] gi|21536742|gb|AAM61074.1|
unknown [Arabidopsis thaliana]
gi|22655156|gb|AAM98168.1| expressed protein
[Arabidopsis thaliana]
Length = 259
Score = 94.7 bits (234), Expect = 8e-19
Identities = 62/141 (43%), Positives = 79/141 (55%), Gaps = 14/141 (9%)
Frame = -1
Query: 588 DTSLDLKLVSYSL------P*SN--------HYESVCTLDKVKSALERAEKEPAILRKRA 451
DTSL+LKLV S+ P S+ + SVCTLDKVK ALERAEK+ +KR
Sbjct: 139 DTSLELKLVPSSISRPLPPPLSSFSPNQSLSYLSSVCTLDKVKLALERAEKDT---KKRQ 195
Query: 450 SSSSYLSSSPSASFSSSSSSIITQAEEECEVKILASPVATGCPGCLTYVLVTKNNPKCPR 271
S + ++S+ + AS VA GCPGCL+YV V KNNPKCPR
Sbjct: 196 SPED------DGVYDGTASATVA-----------ASQVAAGCPGCLSYVFVAKNNPKCPR 238
Query: 270 SNTNVPFRLMKKPRPDLNLSI 208
++ VP MKKP+ DLN+S+
Sbjct: 239 CHSFVPLPAMKKPKIDLNISM 259
>emb|CAB55392.1| zwh0008.1 [Oryza sativa (indica cultivar-group)]
Length = 211
Score = 72.4 bits (176), Expect = 4e-12
Identities = 48/105 (45%), Positives = 57/105 (53%), Gaps = 5/105 (4%)
Frame = -1
Query: 528 SVCTLDKVKSALERAEKEPAILRKRASSSSYLSSSPSASFSSSSSSIITQAEEECEVKIL 349
+VCTLD V+SALERA + A S SSS SAS S SSSSI +
Sbjct: 82 AVCTLDMVRSALERATAGRSAAAAAARGSPATSSSSSASTSWSSSSIGKRHRSPPSGGAA 141
Query: 348 ASPV-----ATGCPGCLTYVLVTKNNPKCPRSNTNVPFRLMKKPR 229
A+P A CP CLTYVL+ + +P+CPR NVP L KPR
Sbjct: 142 ATPASPSMRAAACPSCLTYVLIAEADPRCPRCAGNVP-PLAGKPR 185
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,223,421
Number of Sequences: 1393205
Number of extensions: 10938013
Number of successful extensions: 105352
Number of sequences better than 10.0: 310
Number of HSP's better than 10.0 without gapping: 47495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81923
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
