Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011982A_C01 KMC011982A_c01
(530 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174297.1| hypothetical protein; protein id: At1g30050.1 [... 70 2e-11
ref|NP_195817.1| putative protein; protein id: At5g01970.1, supp... 68 6e-11
ref|NP_565700.1| expressed protein; protein id: At2g30530.1, sup... 64 1e-09
gb|AAO16693.1| expressed protein-like protein [Sorghum bicolor] 44 0.002
ref|NP_587805.1| ubiquitin carboxyl-terminal hydrolase [Schizosa... 36 0.25
>ref|NP_174297.1| hypothetical protein; protein id: At1g30050.1 [Arabidopsis
thaliana] gi|25513551|pir||D86424 43.3K hypothetical
protein - Arabidopsis thaliana
gi|12324165|gb|AAG52052.1|AC022455_6 hypothetical
protein; 65053-66294 [Arabidopsis thaliana]
Length = 389
Score = 70.1 bits (170), Expect = 2e-11
Identities = 49/105 (46%), Positives = 60/105 (56%), Gaps = 4/105 (3%)
Frame = -3
Query: 528 ARENRFLREVVEYHQLTMQDVVYFDEANEEVTEVNPLNFPPRPVITPSAASSSLP--PEA 355
ARENRFLRE+VEYHQLTMQDVVY DE EEV EVNP R + S ++S LP +
Sbjct: 270 ARENRFLREIVEYHQLTMQDVVYIDEGIEEVAEVNP--SITRTLSMASYSASELPSISPS 327
Query: 354 NLSMSSESTRGISFPISEKEAKSSETISKDVKSSEGTR--SISYT 226
S +S S +S I + S T V+S + R S+ YT
Sbjct: 328 PSSPASPSRLSVSTDIYPILVQQSSTNDITVESPKPVRPPSLGYT 372
>ref|NP_195817.1| putative protein; protein id: At5g01970.1, supported by cDNA:
gi_18252946 [Arabidopsis thaliana]
gi|11358403|pir||T48218 hypothetical protein T7H20.20 -
Arabidopsis thaliana gi|7340671|emb|CAB82970.1| putative
protein [Arabidopsis thaliana]
gi|18252947|gb|AAL62400.1| putative protein [Arabidopsis
thaliana] gi|23198058|gb|AAN15556.1| putative protein
[Arabidopsis thaliana]
Length = 351
Score = 68.2 bits (165), Expect = 6e-11
Identities = 35/60 (58%), Positives = 42/60 (69%)
Frame = -3
Query: 528 ARENRFLREVVEYHQLTMQDVVYFDEANEEVTEVNPLNFPPRPVITPSAASSSLPPEANL 349
ARENRFLRE+VEYHQLTMQDVVY DE +EEVT+V+P F + + A S PP +
Sbjct: 273 ARENRFLREIVEYHQLTMQDVVYIDEGSEEVTQVSP--FVSTLMTSSPADRSQSPPSQEM 330
>ref|NP_565700.1| expressed protein; protein id: At2g30530.1, supported by cDNA:
gi_15450620, supported by cDNA: gi_17380637 [Arabidopsis
thaliana] gi|25408085|pir||E84709 hypothetical protein
At2g30530 [imported] - Arabidopsis thaliana
gi|1946366|gb|AAB63084.1| expressed protein [Arabidopsis
thaliana] gi|15450621|gb|AAK96582.1| At2g30530/T6B20.12
[Arabidopsis thaliana] gi|17380638|gb|AAL36082.1|
At2g30530/T6B20.12 [Arabidopsis thaliana]
Length = 371
Score = 63.9 bits (154), Expect = 1e-09
Identities = 30/37 (81%), Positives = 32/37 (86%)
Frame = -3
Query: 525 RENRFLREVVEYHQLTMQDVVYFDEANEEVTEVNPLN 415
REN +LR VVEYHQLTMQDVVYFDE EEVTEV P+N
Sbjct: 313 RENLYLRGVVEYHQLTMQDVVYFDEKTEEVTEVYPIN 349
>gb|AAO16693.1| expressed protein-like protein [Sorghum bicolor]
Length = 443
Score = 43.5 bits (101), Expect = 0.002
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = -3
Query: 528 ARENRFLREVVEYHQLTMQDVVYFDEANEEVTE 430
ARENRFLRE+V++HQ T QDVV ++ + E +E
Sbjct: 346 ARENRFLREIVDFHQFTTQDVVSLNDGDMEDSE 378
>ref|NP_587805.1| ubiquitin carboxyl-terminal hydrolase [Schizosaccharomyces pombe]
gi|7493559|pir||T41069 ubiquitin carboxyl-terminal
hydrolase - fission yeast (Schizosaccharomyces pombe)
gi|3560166|emb|CAA20678.1| ubiquitin carboxyl-terminal
hydrolase [Schizosaccharomyces pombe]
Length = 457
Score = 36.2 bits (82), Expect = 0.25
Identities = 21/62 (33%), Positives = 29/62 (45%)
Frame = -3
Query: 426 NPLNFPPRPVITPSAASSSLPPEANLSMSSESTRGISFPISEKEAKSSETISKDVKSSEG 247
NP+ F P V +PS + N S+ S + S P S K S + S++ K S G
Sbjct: 25 NPVRFRPAVVSSPSVPEGTYTVLNNPKQSTVSRKSFSAPTSPTRNKRSGSSSQEYKKSSG 84
Query: 246 TR 241
TR
Sbjct: 85 TR 86
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,259,442
Number of Sequences: 1393205
Number of extensions: 9361865
Number of successful extensions: 33220
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 30162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32950
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
