Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011955A_C01 KMC011955A_c01
(504 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61381.1| contains similarity to peroxisomal membrane carri... 118 3e-26
dbj|BAB10914.1| contains similarity to peroxisomal membrane carr... 118 4e-26
ref|NP_569032.1| mitochondrial carrier protein family; protein i... 118 4e-26
emb|CAC18152.2| related to peroxisomal Ca-dependent solute carri... 65 3e-10
dbj|BAB55368.1| unnamed protein product [Homo sapiens] 61 6e-09
>gb|AAM61381.1| contains similarity to peroxisomal membrane carrier protein
[Arabidopsis thaliana]
Length = 308
Score = 118 bits (296), Expect = 3e-26
Identities = 56/69 (81%), Positives = 64/69 (92%)
Frame = -1
Query: 504 FQVIRSRLQQRPGGDGVPRYIDSWHVVKETARFEGVRGFYKGITPNLLKNAPASSITFIV 325
FQVIR+RLQQRP +G+PRYIDS HVV+ETAR+EG+RGFY+G+T NLLKN PASSITFIV
Sbjct: 233 FQVIRARLQQRPSTNGIPRYIDSLHVVRETARYEGLRGFYRGLTANLLKNVPASSITFIV 292
Query: 324 YENVLKLLK 298
YENVLKLLK
Sbjct: 293 YENVLKLLK 301
Score = 40.8 bits (94), Expect = 0.009
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -1
Query: 498 VIRSRLQQRPG-GDGVPRYIDSWHVVKETARFEGVRGFYKGITPNLLKNAPASSITFIVY 322
V+R+R Q G G +P Y ++ H V AR EG+RG Y G P ++ + + + F Y
Sbjct: 29 VVRTRFQVNDGRGSSLPTYKNTAHAVFTIARLEGLRGLYAGFFPAVIGSTVSWGLYFFFY 88
>dbj|BAB10914.1| contains similarity to peroxisomal membrane carrier
protein~gene_id:K1F13.3 [Arabidopsis thaliana]
Length = 310
Score = 118 bits (295), Expect = 4e-26
Identities = 55/69 (79%), Positives = 64/69 (92%)
Frame = -1
Query: 504 FQVIRSRLQQRPGGDGVPRYIDSWHVVKETARFEGVRGFYKGITPNLLKNAPASSITFIV 325
FQVIR+RLQQRP +G+PRYIDS HV++ETAR+EG+RGFY+G+T NLLKN PASSITFIV
Sbjct: 235 FQVIRARLQQRPSTNGIPRYIDSLHVIRETARYEGLRGFYRGLTANLLKNVPASSITFIV 294
Query: 324 YENVLKLLK 298
YENVLKLLK
Sbjct: 295 YENVLKLLK 303
Score = 40.8 bits (94), Expect = 0.009
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -1
Query: 498 VIRSRLQQRPG-GDGVPRYIDSWHVVKETARFEGVRGFYKGITPNLLKNAPASSITFIVY 322
V+R+R Q G G +P Y ++ H V AR EG+RG Y G P ++ + + + F Y
Sbjct: 29 VVRTRFQVNDGRGSSLPTYKNTAHAVFTIARLEGLRGLYAGFFPAVIGSTVSWGLYFFFY 88
>ref|NP_569032.1| mitochondrial carrier protein family; protein id: At5g66380.1,
supported by cDNA: 118596. [Arabidopsis thaliana]
Length = 308
Score = 118 bits (295), Expect = 4e-26
Identities = 55/69 (79%), Positives = 64/69 (92%)
Frame = -1
Query: 504 FQVIRSRLQQRPGGDGVPRYIDSWHVVKETARFEGVRGFYKGITPNLLKNAPASSITFIV 325
FQVIR+RLQQRP +G+PRYIDS HV++ETAR+EG+RGFY+G+T NLLKN PASSITFIV
Sbjct: 233 FQVIRARLQQRPSTNGIPRYIDSLHVIRETARYEGLRGFYRGLTANLLKNVPASSITFIV 292
Query: 324 YENVLKLLK 298
YENVLKLLK
Sbjct: 293 YENVLKLLK 301
Score = 40.8 bits (94), Expect = 0.009
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -1
Query: 498 VIRSRLQQRPG-GDGVPRYIDSWHVVKETARFEGVRGFYKGITPNLLKNAPASSITFIVY 322
V+R+R Q G G +P Y ++ H V AR EG+RG Y G P ++ + + + F Y
Sbjct: 29 VVRTRFQVNDGRGSSLPTYKNTAHAVFTIARLEGLRGLYAGFFPAVIGSTVSWGLYFFFY 88
>emb|CAC18152.2| related to peroxisomal Ca-dependent solute carrier protein
[Neurospora crassa] gi|28917254|gb|EAA26965.1|
hypothetical protein ( (AL451012) related to peroxisomal
Ca-dependent solute carrier protein [Neurospora crassa]
)
Length = 631
Score = 65.5 bits (158), Expect = 3e-10
Identities = 34/68 (50%), Positives = 44/68 (64%)
Frame = -1
Query: 498 VIRSRLQQRPGGDGVPRYIDSWHVVKETARFEGVRGFYKGITPNLLKNAPASSITFIVYE 319
V+R+RLQ + P Y V +T R EG+RG YKG+TPNLLK APA SIT++ YE
Sbjct: 563 VLRTRLQTQGTAMHPPTYTGFVDVATKTVRNEGIRGLYKGLTPNLLKVAPALSITWVCYE 622
Query: 318 NVLKLLKL 295
N+ +L L
Sbjct: 623 NMKTILDL 630
>dbj|BAB55368.1| unnamed protein product [Homo sapiens]
Length = 315
Score = 61.2 bits (147), Expect = 6e-09
Identities = 35/68 (51%), Positives = 43/68 (62%)
Frame = -1
Query: 504 FQVIRSRLQQRPGGDGVPRYIDSWHVVKETARFEGVRGFYKGITPNLLKNAPASSITFIV 325
+QV+R+RLQ D Y V+ +T R EGV GFYKGI PNL++ PA ITF+V
Sbjct: 245 YQVVRARLQ-----DQHMFYSGVIDVITKTWRKEGVGGFYKGIAPNLIRVTPACCITFVV 299
Query: 324 YENVLKLL 301
YENV LL
Sbjct: 300 YENVSHLL 307
Score = 33.1 bits (74), Expect = 1.8
Identities = 18/67 (26%), Positives = 33/67 (48%)
Frame = -1
Query: 498 VIRSRLQQRPGGDGVPRYIDSWHVVKETARFEGVRGFYKGITPNLLKNAPASSITFIVYE 319
+++ R G + P+Y H + + +G+RG Y+G+TPN+ + + F Y
Sbjct: 45 LVKIRFAVSDGLELRPKYNGILHCLTTIWKLDGLRGLYQGVTPNIWGAGLSWGLYFFFY- 103
Query: 318 NVLKLLK 298
N +K K
Sbjct: 104 NAIKSYK 110
Score = 30.8 bits (68), Expect = 9.1
Identities = 16/36 (44%), Positives = 22/36 (60%)
Frame = -1
Query: 411 RFEGVRGFYKGITPNLLKNAPASSITFIVYENVLKL 304
++EGVRG YKG P L ++ F+ YE +LKL
Sbjct: 175 KYEGVRGLYKGFVPGLF-GTSHGALQFMAYE-LLKL 208
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 428,064,467
Number of Sequences: 1393205
Number of extensions: 9116603
Number of successful extensions: 21925
Number of sequences better than 10.0: 554
Number of HSP's better than 10.0 without gapping: 20431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21888
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
