Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011941A_C01 KMC011941A_c01
(608 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193699.1| GTP-binding protein, putative; protein id: At4g... 83 2e-15
emb|CAD26971.1| Rab-related small GTP-binding protein [Simmondsi... 83 2e-15
emb|CAC24474.1| GTP binding protein [Cichorium intybus x Cichori... 82 4e-15
emb|CAB57220.1| GTP binding protein [Cichorium intybus x Cichori... 82 4e-15
emb|CAC24477.1| GTP binding protein [Cichorium intybus x Cichori... 82 4e-15
>ref|NP_193699.1| GTP-binding protein, putative; protein id: At4g19640.1, supported
by cDNA: gi_12964605, supported by cDNA: gi_13878092,
supported by cDNA: gi_15450604, supported by cDNA:
gi_17104760 [Arabidopsis thaliana]
gi|7438427|pir||T06157 GTP-binding protein F24J7.190 -
Arabidopsis thaliana gi|2853090|emb|CAA16940.1| small
GTP-binding protein-like [Arabidopsis thaliana]
gi|7268760|emb|CAB78966.1| small GTP-binding
protein-like [Arabidopsis thaliana]
gi|12964606|dbj|BAB32669.1| Ara7 [Arabidopsis thaliana]
gi|13878093|gb|AAK44124.1|AF370309_1 putative small
GTP-binding protein [Arabidopsis thaliana]
gi|15450605|gb|AAK96574.1| AT4g19640/F24J7_190
[Arabidopsis thaliana] gi|17104761|gb|AAL34269.1|
putative small GTP-binding protein [Arabidopsis
thaliana]
Length = 200
Score = 83.2 bits (204), Expect = 2e-15
Identities = 45/81 (55%), Positives = 53/81 (64%), Gaps = 2/81 (2%)
Frame = -2
Query: 604 LVANKADLEDERKVRNEDGEEYAQENGMTFFETSAKTAPNVHELFYEIAKRLAKANPS-R 428
L NK+DL D RKV ED + YAQENG+ F ETSAKTA NV E+FYEIA+RL + P+
Sbjct: 120 LAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTEN 179
Query: 427 PTGISCPSRPPARR-RMFCCA 368
PTG+ P R R CCA
Sbjct: 180 PTGMVLPDRAMDRAVSSSCCA 200
>emb|CAD26971.1| Rab-related small GTP-binding protein [Simmondsia chinensis]
Length = 200
Score = 83.2 bits (204), Expect = 2e-15
Identities = 44/81 (54%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Frame = -2
Query: 604 LVANKADLEDERKVRNEDGEEYAQENGMTFFETSAKTAPNVHELFYEIAKRLAKAN-PSR 428
L NKADLED R V E+ YA++NG+ F ETSAKTA NV+E+FYEIAKRL +A P
Sbjct: 120 LAGNKADLEDRRSVPAEEARIYAEDNGLFFMETSAKTALNVNEIFYEIAKRLPRAQPPQN 179
Query: 427 PTGISCPSRPP-ARRRMFCCA 368
P G+ RPP R CC+
Sbjct: 180 PAGMVLVDRPPEGSRASTCCS 200
>emb|CAC24474.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 196
Score = 82.4 bits (202), Expect = 4e-15
Identities = 43/81 (53%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Frame = -2
Query: 604 LVANKADLEDERKVRNEDGEEYAQENGMTFFETSAKTAPNVHELFYEIAKRLAKANPSR- 428
L NKADLED+RKV E+ YA+ENG+ F ETSAKTA NV+++F+EIAKRL +A P++
Sbjct: 116 LAGNKADLEDKRKVTAEEARVYAEENGLFFMETSAKTAANVNDVFHEIAKRLPRAQPTQN 175
Query: 427 PTGISCPSRP-PARRRMFCCA 368
P G+ RP R CC+
Sbjct: 176 PAGMVLVDRPAEGARAASCCS 196
>emb|CAB57220.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 200
Score = 82.4 bits (202), Expect = 4e-15
Identities = 43/81 (53%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Frame = -2
Query: 604 LVANKADLEDERKVRNEDGEEYAQENGMTFFETSAKTAPNVHELFYEIAKRLAKANPSR- 428
L NKADLED+RKV E+ YA+ENG+ F ETSAKTA NV+++F+EIAKRL +A P++
Sbjct: 120 LAGNKADLEDKRKVTAEEARVYAEENGLFFMETSAKTAANVNDVFHEIAKRLPRAQPTQN 179
Query: 427 PTGISCPSRP-PARRRMFCCA 368
P G+ RP R CC+
Sbjct: 180 PAGMVLVDRPAEGARAASCCS 200
>emb|CAC24477.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 200
Score = 82.4 bits (202), Expect = 4e-15
Identities = 43/81 (53%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Frame = -2
Query: 604 LVANKADLEDERKVRNEDGEEYAQENGMTFFETSAKTAPNVHELFYEIAKRLAKANPSR- 428
L NKADLED+RKV E+ YA+ENG+ F ETSAKTA NV+++F+EIAKRL +A P++
Sbjct: 120 LAGNKADLEDKRKVTAEEARVYAEENGLFFMETSAKTAANVNDVFHEIAKRLPRAQPTQN 179
Query: 427 PTGISCPSRP-PARRRMFCCA 368
P G+ RP R CC+
Sbjct: 180 PAGMVLVDRPAEGARAASCCS 200
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,096,272
Number of Sequences: 1393205
Number of extensions: 11201279
Number of successful extensions: 28919
Number of sequences better than 10.0: 1089
Number of HSP's better than 10.0 without gapping: 27990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28873
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
