Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011930A_C01 KMC011930A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181836.1| hypothetical protein; protein id: At2g43080.1 [... 117 1e-25
ref|NP_564109.1| expressed protein; protein id: At1g20270.1, sup... 72 5e-12
gb|AAM67123.1| prolyl 4-hydroxylase alpha subunit-like protein [... 72 5e-12
ref|NP_566279.1| expressed protein; protein id: At3g06300.1, sup... 72 5e-12
gb|AAM61711.1| putative prolyl 4-hydroxylase, alpha subunit [Ara... 70 1e-11
>ref|NP_181836.1| hypothetical protein; protein id: At2g43080.1 [Arabidopsis
thaliana] gi|25408834|pir||G84861 hypothetical protein
At2g43080 [imported] - Arabidopsis thaliana
gi|3763917|gb|AAC64297.1| hypothetical protein
[Arabidopsis thaliana] gi|20197628|gb|AAM15158.1|
hypothetical protein [Arabidopsis thaliana]
gi|26450452|dbj|BAC42340.1| unknown protein [Arabidopsis
thaliana]
Length = 283
Score = 117 bits (292), Expect = 1e-25
Identities = 49/64 (76%), Positives = 59/64 (91%)
Frame = -2
Query: 312 GSGQCSCGGKTVEGLSVKPTKGNAVLFWSMGLDGQSDPLSVHGGCEVLAGEKWSATKWMR 133
G G C+CGGK ++G+SVKPTKG+AVLFWSMGLDGQSDP S+HGGCEVL+GEKWSATKWMR
Sbjct: 219 GDGDCTCGGKIMKGISVKPTKGDAVLFWSMGLDGQSDPRSIHGGCEVLSGEKWSATKWMR 278
Query: 132 PESS 121
+++
Sbjct: 279 QKAT 282
>ref|NP_564109.1| expressed protein; protein id: At1g20270.1, supported by cDNA:
13404. [Arabidopsis thaliana] gi|25513547|pir||D86336
F14O10.12 protein - Arabidopsis thaliana
gi|9558598|gb|AAF88161.1|AC026234_12 Contains similarity
to a prolyl 4-hydroxylase alpha subunit protein from
Gallus gallus gi|212530. [Arabidopsis thaliana]
Length = 287
Score = 72.0 bits (175), Expect = 5e-12
Identities = 33/53 (62%), Positives = 38/53 (71%)
Frame = -2
Query: 294 CGGKTVEGLSVKPTKGNAVLFWSMGLDGQSDPLSVHGGCEVLAGEKWSATKWM 136
CG K GLSVKP G+A+LFWSM D DP S+HGGC V+ G KWS+TKWM
Sbjct: 231 CGKK---GLSVKPRMGDALLFWSMRPDATLDPTSLHGGCPVIRGNKWSSTKWM 280
>gb|AAM67123.1| prolyl 4-hydroxylase alpha subunit-like protein [Arabidopsis
thaliana]
Length = 297
Score = 72.0 bits (175), Expect = 5e-12
Identities = 31/56 (55%), Positives = 42/56 (74%)
Frame = -2
Query: 276 EGLSVKPTKGNAVLFWSMGLDGQSDPLSVHGGCEVLAGEKWSATKWMRPESSPMIL 109
+G++VKP KGNA+LF+++ D DP S+HGGC V+ GEKWSATKW+ +S IL
Sbjct: 196 KGIAVKPKKGNALLFFNLQQDAIPDPFSLHGGCPVIEGEKWSATKWIHVDSFDKIL 251
>ref|NP_566279.1| expressed protein; protein id: At3g06300.1, supported by cDNA:
95931. [Arabidopsis thaliana]
Length = 299
Score = 72.0 bits (175), Expect = 5e-12
Identities = 31/56 (55%), Positives = 42/56 (74%)
Frame = -2
Query: 276 EGLSVKPTKGNAVLFWSMGLDGQSDPLSVHGGCEVLAGEKWSATKWMRPESSPMIL 109
+G++VKP KGNA+LF+++ D DP S+HGGC V+ GEKWSATKW+ +S IL
Sbjct: 198 KGIAVKPKKGNALLFFNLQQDAIPDPFSLHGGCPVIEGEKWSATKWIHVDSFDKIL 253
>gb|AAM61711.1| putative prolyl 4-hydroxylase, alpha subunit [Arabidopsis thaliana]
Length = 287
Score = 70.5 bits (171), Expect = 1e-11
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = -2
Query: 294 CGGKTVEGLSVKPTKGNAVLFWSMGLDGQSDPLSVHGGCEVLAGEKWSATKWM 136
CG K GLSVKP G+A+LFWSM D DP S+HGGC V+ G KWS+TKW+
Sbjct: 231 CGKK---GLSVKPRMGDALLFWSMRPDATLDPTSLHGGCPVIRGNKWSSTKWI 280
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,320,119
Number of Sequences: 1393205
Number of extensions: 9446129
Number of successful extensions: 19934
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 19441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19913
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
