Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011922A_C01 KMC011922A_c01
(470 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_446099.1| small inducible cytokine subfamily, member 2 [R... 36 0.18
dbj|BAB12280.1| CINC-2 alpha [Rattus norvegicus] gi|9967171|dbj|... 34 0.88
ref|NP_612531.1| cytokine-induced neutrophil chemoattractant-2 [... 34 0.88
ref|NP_033166.1| chemokine (C-X-C motif) ligand 2; small inducib... 32 2.6
ref|XP_284097.1| similar to chemokine (C-X-C motif) ligand 2; sm... 32 2.6
>ref|NP_446099.1| small inducible cytokine subfamily, member 2 [Rattus norvegicus]
gi|266536|sp|P30348|MIP2_RAT Macrophage inflammatory
protein 2 precursor (MIP2) (CINC-3)
gi|111933|pir||S21467 macrophage inflammatory protein 2
- rat gi|2119660|pir||I55614 macrophage inflammatory
protein-2 - rat gi|56666|emb|CAA46599.1| macrophage
inflammatory protein-2 [Rattus norvegicus]
gi|998407|gb|AAB33749.1| macrophage inflammatory
protein-2; MIP-2 [Rattus sp.] gi|1228141|gb|AAA92438.1|
macrophage inflammatory protein-2 precursor
gi|13647123|dbj|BAB41105.1| macrophage inflammatory
protein-2 [Rattus norvegicus]
Length = 100
Score = 36.2 bits (82), Expect = 0.18
Identities = 15/41 (36%), Positives = 24/41 (57%)
Frame = +2
Query: 149 Q*LRSLYVISLINPAAHQGLGTLNVFEIECQCLYTFPKISY 271
Q L ++ V+ L+ HQG G + E+ CQCL T P++ +
Sbjct: 7 QLLNAVLVLLLLLATNHQGTGVVVASELRCQCLTTLPRVDF 47
>dbj|BAB12280.1| CINC-2 alpha [Rattus norvegicus] gi|9967171|dbj|BAB12279.1| CINC-2
alpha [Rattus norvegicus]
Length = 101
Score = 33.9 bits (76), Expect = 0.88
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 161 SLYVISLINPAAHQGLGTLNVFEIECQCLYTFPKISY 271
+L ++ L+ +HQ GT+ E+ CQCL T P++ +
Sbjct: 12 ALLLLLLLMATSHQPSGTVVARELRCQCLKTLPRVDF 48
>ref|NP_612531.1| cytokine-induced neutrophil chemoattractant-2 [Rattus norvegicus]
gi|1709028|sp|Q10747|MI2B_RAT MACROPHAGE INFLAMMATORY
PROTEIN-2-BETA PRECURSOR (MIP2-BETA) (CINC-2-BETA)
gi|1072456|pir||S46198 cytokine-induced neutrophil
chemoattractant 2 - rat gi|517144|dbj|BAA04657.1|
cytokine-induced neutrophil chemoattractant-2 beta
[Rattus norvegicus] gi|9967172|dbj|BAB12336.1| CINC-2
beta [Rattus norvegicus]
Length = 100
Score = 33.9 bits (76), Expect = 0.88
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 161 SLYVISLINPAAHQGLGTLNVFEIECQCLYTFPKISY 271
+L ++ L+ +HQ GT+ E+ CQCL T P++ +
Sbjct: 12 ALLLLLLLMATSHQPSGTVVARELRCQCLKTLPRVDF 48
>ref|NP_033166.1| chemokine (C-X-C motif) ligand 2; small inducible cytokine
subfamily, member 2 [Mus musculus]
gi|127100|sp|P10889|MIP2_MOUSE Macrophage inflammatory
protein 2 precursor (MIP2) gi|91065|pir||JH0200
macrophage inflammatory protein 2 precursor - mouse
gi|53129|emb|CAA37807.1| macrophage inflammatory
protein-2 precursor [Mus musculus]
Length = 100
Score = 32.3 bits (72), Expect = 2.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 155 LRSLYVISLINPAAHQGLGTLNVFEIECQCLYTFPKISY 271
L + V+ L+ HQ G + E+ CQCL T P++ +
Sbjct: 9 LSAALVLLLLLATNHQATGAVVASELRCQCLKTLPRVDF 47
>ref|XP_284097.1| similar to chemokine (C-X-C motif) ligand 2; small inducible
cytokine subfamily, member 2 [Mus musculus]
Length = 100
Score = 32.3 bits (72), Expect = 2.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 155 LRSLYVISLINPAAHQGLGTLNVFEIECQCLYTFPKISY 271
L + V+ L+ HQ G + E+ CQCL T P++ +
Sbjct: 9 LSAALVLLLLLATNHQATGAVVASELRCQCLNTLPRVDF 47
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 353,357,811
Number of Sequences: 1393205
Number of extensions: 6694685
Number of successful extensions: 10432
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10429
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
