Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011913A_C01 KMC011913A_c01
(709 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB86428.1| putative 4-diphosphocytidyl-2-C-methyl-D-erythri... 92 7e-18
sp|P56848|ISPE_MENPI 4-diphosphocytidyl-2-C-methyl-D-erythritol ... 92 7e-18
gb|AAF76143.1|AF258339_1 4-diphosphocytidyl-2C-methyl-D-erythrit... 91 2e-17
sp|P93841|ISPE_LYCES 4-diphosphocytidyl-2-C-methyl-D-erythritol ... 91 2e-17
ref|NP_180261.1| putative ripening-associated protein; protein i... 79 8e-14
>dbj|BAB86428.1| putative 4-diphosphocytidyl-2-C-methyl-D-erythri tol kinase [Oryza
sativa (japonica cultivar-group)]
Length = 401
Score = 92.0 bits (227), Expect = 7e-18
Identities = 45/64 (70%), Positives = 51/64 (79%)
Frame = -3
Query: 521 GVGLGGGSSNAATAVWAANRFSGCPST*K*LPEWSREIGSHFPFFFS**AAYCTGGGEVS 342
G GLGGGSSNAATA+WAAN+FSGC ++ K L EWS EIGS PFFFS AAYCTG GE+
Sbjct: 182 GAGLGGGSSNAATALWAANQFSGCIASEKELQEWSGEIGSDIPFFFSQGAAYCTGRGEIV 241
Query: 341 PNIR 330
+IR
Sbjct: 242 EDIR 245
>sp|P56848|ISPE_MENPI 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast
precursor (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase) gi|6478464|gb|AAF13866.1|AF179283_1 isopentenyl
monophosphate kinase [Mentha x piperita]
gi|6688843|emb|CAB65292.1| isopentenyl monophosphate
kinase [Mentha x piperita]
Length = 405
Score = 92.0 bits (227), Expect = 7e-18
Identities = 46/63 (73%), Positives = 50/63 (79%)
Frame = -3
Query: 521 GVGLGGGSSNAATAVWAANRFSGCPST*K*LPEWSREIGSHFPFFFS**AAYCTGGGEVS 342
G GLGGGSSNAATA+WAAN+FSGC +T K L EWS EIGS PFFFS AAYCTG GEV
Sbjct: 192 GAGLGGGSSNAATALWAANQFSGCIATEKDLQEWSGEIGSDIPFFFSHGAAYCTGRGEVV 251
Query: 341 PNI 333
+I
Sbjct: 252 EDI 254
>gb|AAF76143.1|AF258339_1 4-diphosphocytidyl-2C-methyl-D-erythritol kinase [Expression vector
pNCO-HIS6-TM-YCHB]
Length = 331
Score = 90.9 bits (224), Expect = 2e-17
Identities = 45/63 (71%), Positives = 49/63 (77%)
Frame = -3
Query: 521 GVGLGGGSSNAATAVWAANRFSGCPST*K*LPEWSREIGSHFPFFFS**AAYCTGGGEVS 342
G GLGGGSSNAAT +WAAN+FSGC +T K L EWS EIGS PFFFS AAYCTG GEV
Sbjct: 113 GAGLGGGSSNAATTLWAANQFSGCVATEKELQEWSGEIGSDIPFFFSHGAAYCTGRGEVV 172
Query: 341 PNI 333
+I
Sbjct: 173 QDI 175
>sp|P93841|ISPE_LYCES 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast
precursor (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase) (Ripening-associated protein pTOM41)
gi|7489069|pir||T07419 ripening-associated protein,
chromoplast - tomato (fragment)
gi|1899050|gb|AAB49936.1| ripening-associated protein
[Lycopersicon esculentum]
gi|9454221|gb|AAF87717.1|AF263101_1
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
[Lycopersicon esculentum]
Length = 401
Score = 90.9 bits (224), Expect = 2e-17
Identities = 45/63 (71%), Positives = 49/63 (77%)
Frame = -3
Query: 521 GVGLGGGSSNAATAVWAANRFSGCPST*K*LPEWSREIGSHFPFFFS**AAYCTGGGEVS 342
G GLGGGSSNAAT +WAAN+FSGC +T K L EWS EIGS PFFFS AAYCTG GEV
Sbjct: 183 GAGLGGGSSNAATTLWAANQFSGCVATEKELQEWSGEIGSDIPFFFSHGAAYCTGRGEVV 242
Query: 341 PNI 333
+I
Sbjct: 243 QDI 245
>ref|NP_180261.1| putative ripening-associated protein; protein id: At2g26930.1,
supported by cDNA: gi_12697584, supported by cDNA:
gi_9864190 [Arabidopsis thaliana]
gi|7387807|sp|O81014|ISPE_ARATH
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase,
chloroplast precursor (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase) (CDPMEK) gi|7488313|pir||T02642 probable
ripening-associated protein [imported] - Arabidopsis
thaliana gi|3426035|gb|AAC32234.1| putative
ripening-associated protein [Arabidopsis thaliana]
gi|12697585|dbj|BAB21593.1| 4-(cytidine
5'-phospho)-2-C-methyl-D-erithritol kinase [Arabidopsis
thaliana] gi|22531112|gb|AAM97060.1| putative
ripening-associated protein [Arabidopsis thaliana]
gi|23198000|gb|AAN15527.1| putative ripening-associated
protein [Arabidopsis thaliana]
Length = 383
Score = 78.6 bits (192), Expect = 8e-14
Identities = 39/59 (66%), Positives = 43/59 (72%)
Frame = -3
Query: 521 GVGLGGGSSNAATAVWAANRFSGCPST*K*LPEWSREIGSHFPFFFS**AAYCTGGGEV 345
G GLGGGSSNAATA+WAAN +G T L +WS EIGS PFFFS AAYCTG GE+
Sbjct: 167 GAGLGGGSSNAATALWAANELNGGLVTENELQDWSSEIGSDIPFFFSHGAAYCTGRGEI 225
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 611,943,504
Number of Sequences: 1393205
Number of extensions: 13660248
Number of successful extensions: 35849
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 34144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35754
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32373034405
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
