Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011910A_C01 KMC011910A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_084540.1| cDNA sequence BC002118; hypothetical protein, M... 122 3e-27
pir||S14305 chlorophyll a/b-binding protein (cab-11) - tomato 119 2e-26
pir||S14306 chlorophyll a/b-binding protein (cab-12) - tomato 119 3e-26
ref|NP_190331.2| light-harvesting chlorophyll a/b binding protei... 118 6e-26
ref|NP_680103.1| light-harvesting chlorophyll a/b binding protei... 118 6e-26
>ref|NP_084540.1| cDNA sequence BC002118; hypothetical protein, MGC:6623 [Mus
musculus] gi|12805303|gb|AAH02118.1| Unknown (protein
for MGC:6623) [Mus musculus]
Length = 252
Score = 122 bits (307), Expect = 3e-27
Identities = 65/89 (73%), Positives = 70/89 (78%)
Frame = -3
Query: 589 IEFILFHYVEIRRWQDIKNXGSVNQDPIFKQYSLPPNEVGYPGGIFNPLHFAPTEEAEAT 410
IEFILFHYVEIRRWQDIKN GSVNQDPIFKQYSLPPNEVGYPGGIFNPL+FAPT EA+
Sbjct: 144 IEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTAEAK-E 202
Query: 409 RNLPHGRVGNAWHSLGFICSTPT*PGKGP 323
+ L +GR+ LGFI GKGP
Sbjct: 203 KELANGRLA-MLAFLGFIVQHNV-TGKGP 229
>pir||S14305 chlorophyll a/b-binding protein (cab-11) - tomato
Length = 251
Score = 119 bits (299), Expect = 2e-26
Identities = 63/89 (70%), Positives = 69/89 (76%)
Frame = -3
Query: 589 IEFILFHYVEIRRWQDIKNXGSVNQDPIFKQYSLPPNEVGYPGGIFNPLHFAPTEEAEAT 410
IEFILFHYVEIRRWQDIKN GSVNQDPIFK YSLPPN+ GYPGGIFNPL+FAPTEEA+
Sbjct: 144 IEFILFHYVEIRRWQDIKNPGSVNQDPIFKNYSLPPNKCGYPGGIFNPLNFAPTEEAK-E 202
Query: 409 RNLPHGRVGNAWHSLGFICSTPT*PGKGP 323
+ L +GR+ LGFI GKGP
Sbjct: 203 KELANGRLA-MLAFLGFIVQHNV-TGKGP 229
>pir||S14306 chlorophyll a/b-binding protein (cab-12) - tomato
Length = 250
Score = 119 bits (298), Expect = 3e-26
Identities = 63/89 (70%), Positives = 69/89 (76%)
Frame = -3
Query: 589 IEFILFHYVEIRRWQDIKNXGSVNQDPIFKQYSLPPNEVGYPGGIFNPLHFAPTEEAEAT 410
IEFILFHYVEIRRWQDIKN GSVNQDPIFK YSLPPNEVGYPGGIFNPL+FAPT EA+
Sbjct: 143 IEFILFHYVEIRRWQDIKNPGSVNQDPIFKSYSLPPNEVGYPGGIFNPLNFAPTLEAK-E 201
Query: 409 RNLPHGRVGNAWHSLGFICSTPT*PGKGP 323
+ + +GR+ LGFI GKGP
Sbjct: 202 KEIANGRLA-MLAFLGFIVQHNV-TGKGP 228
>ref|NP_190331.2| light-harvesting chlorophyll a/b binding protein; protein id:
At3g47470.1, supported by cDNA: gi_13358203 [Arabidopsis
thaliana] gi|11762172|gb|AAG40364.1|AF325012_1 AT3g47470
[Arabidopsis thaliana]
Length = 148
Score = 118 bits (295), Expect = 6e-26
Identities = 62/89 (69%), Positives = 69/89 (76%)
Frame = -3
Query: 589 IEFILFHYVEIRRWQDIKNXGSVNQDPIFKQYSLPPNEVGYPGGIFNPLHFAPTEEAEAT 410
IEFILFHYVEIRRWQDIKN GSVNQDPIFKQYSLP EVGYPGGIFNPL+FAPT+EA+
Sbjct: 42 IEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTQEAK-E 100
Query: 409 RNLPHGRVGNAWHSLGFICSTPT*PGKGP 323
+ L +GR+ LGF+ GKGP
Sbjct: 101 KELANGRLA-MLAFLGFVVQHNV-TGKGP 127
>ref|NP_680103.1| light-harvesting chlorophyll a/b binding protein; protein id:
At3g47470.2, supported by cDNA: 2531., supported by
cDNA: gi_166645, supported by cDNA: gi_20260361
[Arabidopsis thaliana] gi|115385|sp|P27521|CB24_ARATH
Chlorophyll A-B binding protein 4, chloroplast precursor
(LHCI type III CAB-4) (LHCP) gi|11277628|pir||T45707
CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog -
Arabidopsis thaliana gi|166646|gb|AAA32760.1|
light-harvesting chlorophyll a/b binding protein
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING
PROTEIN 4 PRECURSOR homolog [Arabidopsis thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding
protein 4 precursor homolog [Arabidopsis thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding
protein 4 precursor homolog [Arabidopsis thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding
protein 4 precursor homolog [Arabidopsis thaliana]
Length = 251
Score = 118 bits (295), Expect = 6e-26
Identities = 62/89 (69%), Positives = 69/89 (76%)
Frame = -3
Query: 589 IEFILFHYVEIRRWQDIKNXGSVNQDPIFKQYSLPPNEVGYPGGIFNPLHFAPTEEAEAT 410
IEFILFHYVEIRRWQDIKN GSVNQDPIFKQYSLP EVGYPGGIFNPL+FAPT+EA+
Sbjct: 145 IEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTQEAK-E 203
Query: 409 RNLPHGRVGNAWHSLGFICSTPT*PGKGP 323
+ L +GR+ LGF+ GKGP
Sbjct: 204 KELANGRLA-MLAFLGFVVQHNV-TGKGP 230
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 552,102,392
Number of Sequences: 1393205
Number of extensions: 13101710
Number of successful extensions: 30587
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 29710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30574
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
