Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011907A_C01 KMC011907A_c01
(993 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF02830.1|AC009894_1 phosphoglycerate kinase [Arabidopsis th... 466 e-130
ref|NP_176015.1| phosphoglycerate kinase, putative; protein id: ... 466 e-130
sp|P50318|PGKH_ARATH Phosphoglycerate kinase, chloroplast precursor 466 e-130
dbj|BAA33803.1| chloroplast phosphoglycerate kinase [Populus nigra] 464 e-130
ref|NP_187884.1| phosphoglycerate kinase, putative; protein id: ... 461 e-129
>gb|AAF02830.1|AC009894_1 phosphoglycerate kinase [Arabidopsis thaliana]
Length = 320
Score = 466 bits (1199), Expect = e-130
Identities = 249/311 (80%), Positives = 275/311 (88%), Gaps = 1/311 (0%)
Frame = +2
Query: 62 MASTAAAPTAFSLLRSTTTSSTTTATSSSRVHLSSTFGVRPLRRLGFSAA-DPLLAVNVA 238
MASTAA A S+++ST ++ T ++ +S H+ ST RRLGFSA D +V+VA
Sbjct: 1 MASTAAT-AALSIIKSTGGAAVTRSSRASFGHIPSTSV--SARRLGFSAVVDSRFSVHVA 57
Query: 239 SRVAAVRGKGVRAVAAMAKKSVGDLSAAELKGKKVFVRADLNVPLDDNQNITDDTRIRAA 418
S+V +VRGKG R V MAKKSVGDL++ +LKGKKVFVRADLNVPLDDNQNITDDTRIRAA
Sbjct: 58 SKVHSVRGKGARGVITMAKKSVGDLNSVDLKGKKVFVRADLNVPLDDNQNITDDTRIRAA 117
Query: 419 IPTIKHLIQNGAKVILTTHLGRPKGVTPKYSLAPLVPRLSELIGIQVVKADDSIGPDVEK 598
IPTIK LI+NGAKVIL+THLGRPKGVTPK+SLAPLVPRLSEL+GI+VVKADD IGP+VE
Sbjct: 118 IPTIKFLIENGAKVILSTHLGRPKGVTPKFSLAPLVPRLSELLGIEVVKADDCIGPEVET 177
Query: 599 LVASLPDGGVLLLENVRFYPEEEKNDPEHAKKLASLADLYVNDAFGTAHRAHASTEGVTK 778
LVASLP+GGVLLLENVRFY EEEKN+P+ AKKLASLADLYVNDAFGTAHRAHASTEGVTK
Sbjct: 178 LVASLPEGGVLLLENVRFYKEEEKNEPDFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 237
Query: 779 YLKPSVAGFLLQKELDYLVGAVSTPKRPFAAIVGGSKVSSKIGVIESLLEKVDILLLGGG 958
+LKPSVAGFLLQKELDYLVGAVS PKRPFAAIVGGSKVSSKIGVIESLLEK DILLLGGG
Sbjct: 238 FLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGG 297
Query: 959 MIFTFYKAQGL 991
MIFTFYKAQGL
Sbjct: 298 MIFTFYKAQGL 308
>ref|NP_176015.1| phosphoglycerate kinase, putative; protein id: At1g56190.1,
supported by cDNA: gi_15810504, supported by cDNA:
gi_20466263 [Arabidopsis thaliana]
gi|25288114|pir||D96603 probable phosphoglycerate kinase
F14G9.19 [imported] - Arabidopsis thaliana
gi|12321760|gb|AAG50920.1|AC069159_21 phosphoglycerate
kinase, putative [Arabidopsis thaliana]
gi|15810505|gb|AAL07140.1| putative phosphoglycerate
kinase [Arabidopsis thaliana] gi|20466264|gb|AAM20449.1|
phosphoglycerate kinase, putative [Arabidopsis thaliana]
gi|23198084|gb|AAN15569.1| phosphoglycerate kinase,
putative [Arabidopsis thaliana]
Length = 478
Score = 466 bits (1199), Expect = e-130
Identities = 249/311 (80%), Positives = 275/311 (88%), Gaps = 1/311 (0%)
Frame = +2
Query: 62 MASTAAAPTAFSLLRSTTTSSTTTATSSSRVHLSSTFGVRPLRRLGFSAA-DPLLAVNVA 238
MASTAA A S+++ST ++ T ++ +S H+ ST RRLGFSA D +V+VA
Sbjct: 1 MASTAAT-AALSIIKSTGGAAVTRSSRASFGHIPSTSV--SARRLGFSAVVDSRFSVHVA 57
Query: 239 SRVAAVRGKGVRAVAAMAKKSVGDLSAAELKGKKVFVRADLNVPLDDNQNITDDTRIRAA 418
S+V +VRGKG R V MAKKSVGDL++ +LKGKKVFVRADLNVPLDDNQNITDDTRIRAA
Sbjct: 58 SKVHSVRGKGARGVITMAKKSVGDLNSVDLKGKKVFVRADLNVPLDDNQNITDDTRIRAA 117
Query: 419 IPTIKHLIQNGAKVILTTHLGRPKGVTPKYSLAPLVPRLSELIGIQVVKADDSIGPDVEK 598
IPTIK LI+NGAKVIL+THLGRPKGVTPK+SLAPLVPRLSEL+GI+VVKADD IGP+VE
Sbjct: 118 IPTIKFLIENGAKVILSTHLGRPKGVTPKFSLAPLVPRLSELLGIEVVKADDCIGPEVET 177
Query: 599 LVASLPDGGVLLLENVRFYPEEEKNDPEHAKKLASLADLYVNDAFGTAHRAHASTEGVTK 778
LVASLP+GGVLLLENVRFY EEEKN+P+ AKKLASLADLYVNDAFGTAHRAHASTEGVTK
Sbjct: 178 LVASLPEGGVLLLENVRFYKEEEKNEPDFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 237
Query: 779 YLKPSVAGFLLQKELDYLVGAVSTPKRPFAAIVGGSKVSSKIGVIESLLEKVDILLLGGG 958
+LKPSVAGFLLQKELDYLVGAVS PKRPFAAIVGGSKVSSKIGVIESLLEK DILLLGGG
Sbjct: 238 FLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGG 297
Query: 959 MIFTFYKAQGL 991
MIFTFYKAQGL
Sbjct: 298 MIFTFYKAQGL 308
>sp|P50318|PGKH_ARATH Phosphoglycerate kinase, chloroplast precursor
Length = 478
Score = 466 bits (1199), Expect = e-130
Identities = 249/311 (80%), Positives = 275/311 (88%), Gaps = 1/311 (0%)
Frame = +2
Query: 62 MASTAAAPTAFSLLRSTTTSSTTTATSSSRVHLSSTFGVRPLRRLGFSAA-DPLLAVNVA 238
MASTAA A S+++ST ++ T ++ +S H+ ST RRLGFSA D +V+VA
Sbjct: 1 MASTAAT-AALSIIKSTGGAAVTRSSRASFGHIPSTSV--SARRLGFSAVVDSRFSVHVA 57
Query: 239 SRVAAVRGKGVRAVAAMAKKSVGDLSAAELKGKKVFVRADLNVPLDDNQNITDDTRIRAA 418
S+V +VRGKG R V MAKKSVGDL++ +LKGKKVFVRADLNVPLDDNQNITDDTRIRAA
Sbjct: 58 SKVHSVRGKGARGVITMAKKSVGDLNSVDLKGKKVFVRADLNVPLDDNQNITDDTRIRAA 117
Query: 419 IPTIKHLIQNGAKVILTTHLGRPKGVTPKYSLAPLVPRLSELIGIQVVKADDSIGPDVEK 598
IPTIK LI+NGAKVIL+THLGRPKGVTPK+SLAPLVPRLSEL+GI+VVKADD IGP+VE
Sbjct: 118 IPTIKFLIENGAKVILSTHLGRPKGVTPKFSLAPLVPRLSELLGIEVVKADDCIGPEVET 177
Query: 599 LVASLPDGGVLLLENVRFYPEEEKNDPEHAKKLASLADLYVNDAFGTAHRAHASTEGVTK 778
LVASLP+GGVLLLENVRFY EEEKN+P+ AKKLASLADLYVNDAFGTAHRAHASTEGVTK
Sbjct: 178 LVASLPEGGVLLLENVRFYKEEEKNEPDFAKKLASLADLYVNDAFGTAHRAHASTEGVTK 237
Query: 779 YLKPSVAGFLLQKELDYLVGAVSTPKRPFAAIVGGSKVSSKIGVIESLLEKVDILLLGGG 958
+LKPSVAGFLLQKELDYLVGAVS PKRPFAAIVGGSKVSSKIGVIESLLEK DILLLGGG
Sbjct: 238 FLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGG 297
Query: 959 MIFTFYKAQGL 991
MIFTFYKAQGL
Sbjct: 298 MIFTFYKAQGL 308
>dbj|BAA33803.1| chloroplast phosphoglycerate kinase [Populus nigra]
Length = 481
Score = 464 bits (1195), Expect = e-130
Identities = 242/310 (78%), Positives = 273/310 (88%), Gaps = 2/310 (0%)
Frame = +2
Query: 68 STAAAPTAFSLLRSTTTSSTTTATSSSRVHLSSTFGVRPLRRLGFSAADPLLAVNVASRV 247
++A APT SLL++ S++T+A +S +S LR LGFSAADPL + +V S++
Sbjct: 2 ASATAPTTLSLLKTAAASTSTSARASLLPVSTSGLRTTSLRGLGFSAADPLFSSHVVSKI 61
Query: 248 AAVR--GKGVRAVAAMAKKSVGDLSAAELKGKKVFVRADLNVPLDDNQNITDDTRIRAAI 421
+ + G+ RAV +MAKKSVGDL+AA+LKGKKVFVRADLNVPLD+NQ ITDDTRIRAA+
Sbjct: 62 RSFKSNGRAPRAVVSMAKKSVGDLTAADLKGKKVFVRADLNVPLDENQKITDDTRIRAAV 121
Query: 422 PTIKHLIQNGAKVILTTHLGRPKGVTPKYSLAPLVPRLSELIGIQVVKADDSIGPDVEKL 601
PTIK+LI GAKVIL++HLGRPKGVTPK+SLAPLVPRLSEL+GIQVVKADD IGP+VEKL
Sbjct: 122 PTIKYLISKGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKL 181
Query: 602 VASLPDGGVLLLENVRFYPEEEKNDPEHAKKLASLADLYVNDAFGTAHRAHASTEGVTKY 781
VASLP+GGVLLLENVRFY EEEKN+PE AKKLAS+ADLYVNDAFGTAHRAHASTEGVTK+
Sbjct: 182 VASLPEGGVLLLENVRFYKEEEKNEPEFAKKLASMADLYVNDAFGTAHRAHASTEGVTKF 241
Query: 782 LKPSVAGFLLQKELDYLVGAVSTPKRPFAAIVGGSKVSSKIGVIESLLEKVDILLLGGGM 961
LKPSVAGFLLQKELDYLVGAVS PKRPFAAIVGGSKVSSKIGVIESLLEK DILLLGGGM
Sbjct: 242 LKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGM 301
Query: 962 IFTFYKAQGL 991
IFTFYKAQGL
Sbjct: 302 IFTFYKAQGL 311
>ref|NP_187884.1| phosphoglycerate kinase, putative; protein id: At3g12780.1,
supported by cDNA: 21955., supported by cDNA:
gi_13430643, supported by cDNA: gi_15010643, supported
by cDNA: gi_16226507, supported by cDNA: gi_16648942,
supported by cDNA: gi_17065609, supported by cDNA:
gi_20334795, supported by cDNA: gi_7839388 [Arabidopsis
thaliana] gi|7839389|gb|AAF70258.1|AF247558_1
phosphoglycerate kinase [Arabidopsis thaliana]
gi|11994421|dbj|BAB02423.1| phosphoglycerate kinase
[Arabidopsis thaliana]
gi|13430644|gb|AAK25944.1|AF360234_1 putative
phosphoglycerate kinase [Arabidopsis thaliana]
gi|15010644|gb|AAK73981.1| AT3g12780/MBK21_14
[Arabidopsis thaliana]
gi|16226508|gb|AAL16186.1|AF428418_1 AT3g12780/MBK21_14
[Arabidopsis thaliana] gi|16648943|gb|AAL24323.1|
phosphoglycerate kinase [Arabidopsis thaliana]
gi|17065610|gb|AAL33785.1| putative phosphoglycerate
kinase [Arabidopsis thaliana] gi|20334796|gb|AAM16259.1|
AT3g12780/MBK21_14 [Arabidopsis thaliana]
gi|21387107|gb|AAM47957.1| phosphoglycerate kinase
[Arabidopsis thaliana] gi|22022520|gb|AAM83218.1|
AT3g12780/MBK21_14 [Arabidopsis thaliana]
Length = 481
Score = 461 bits (1187), Expect = e-129
Identities = 248/313 (79%), Positives = 275/313 (87%), Gaps = 5/313 (1%)
Frame = +2
Query: 68 STAAAPTAFSLLRST---TTSSTTTATSSSRVHLSSTFGVRPLRRLGFSAA--DPLLAVN 232
++AAA +AFSLL+ST +S+ T A +S S++ RPL GFSA +++
Sbjct: 2 ASAAASSAFSLLKSTGAVASSAGTRARASLLPIPSTSVSARPL---GFSATLDSRRFSLH 58
Query: 233 VASRVAAVRGKGVRAVAAMAKKSVGDLSAAELKGKKVFVRADLNVPLDDNQNITDDTRIR 412
VAS+V +VRGKG R V +MAKKSVGDL++A+LKGKKVFVRADLNVPLDDNQ ITDDTRIR
Sbjct: 59 VASKVESVRGKGSRGVVSMAKKSVGDLTSADLKGKKVFVRADLNVPLDDNQTITDDTRIR 118
Query: 413 AAIPTIKHLIQNGAKVILTTHLGRPKGVTPKYSLAPLVPRLSELIGIQVVKADDSIGPDV 592
AAIPTIK+LI+NGAKVIL+THLGRPKGVTPK+SLAPLVPRLSEL+GI+V KADD IGP+V
Sbjct: 119 AAIPTIKYLIENGAKVILSTHLGRPKGVTPKFSLAPLVPRLSELLGIEVTKADDCIGPEV 178
Query: 593 EKLVASLPDGGVLLLENVRFYPEEEKNDPEHAKKLASLADLYVNDAFGTAHRAHASTEGV 772
E LVASLP+GGVLLLENVRFY EEEKNDPE AKKLASLADLYVNDAFGTAHRAHASTEGV
Sbjct: 179 ESLVASLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGV 238
Query: 773 TKYLKPSVAGFLLQKELDYLVGAVSTPKRPFAAIVGGSKVSSKIGVIESLLEKVDILLLG 952
TK+LKPSVAGFLLQKELDYLVGAVS PKRPFAAIVGGSKVSSKIGVIESLLEK DILLLG
Sbjct: 239 TKFLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLG 298
Query: 953 GGMIFTFYKAQGL 991
GGMIFTFYKAQGL
Sbjct: 299 GGMIFTFYKAQGL 311
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,017,644,217
Number of Sequences: 1393205
Number of extensions: 29782069
Number of successful extensions: 644089
Number of sequences better than 10.0: 4986
Number of HSP's better than 10.0 without gapping: 146178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401692
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 56841956362
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
