[KDRI]Lotus japonicus Consensus Sequences

KMC011891A_c01
[Fasta Sequence] [Nr Search] [EST assemble image]

>KMC011891A_C01 KMC011891A_c01
ctcttcttcttcttcttctagattccgactcgccgtgttgactcggtccgggtcggggtt
taaccgccaactcgcttctcAATTCTCAATTCTCGCCTCCACCACACGCGGATCTCAAGG
AAAAGCAAAGGGTGTATCACCATGAAGGCTCTGATTCTTGTTGGGGGGTTCGGAACTAGG
TTGAGGCCATTGACACTCAGTTTCCCTAAGCCTCTTGTTGATTTTGCTAACAAGCCTATG
ATTCTGCACCAGATAGAGGCTCTTAAGGCCGCTGGAGTTACTGGAAGTGGTACTAGCCAT
CAATTACCAACCAGAGGTTATGTTAAACTTCTTGAAGGACTTTGAAGCAAAGCTCGGCAT
CAAGATCTCATGTTCTCAAGAAACTGAACCTCTGGGAACTGCTGGCCCCCTTGCTCTAGC
TAGGGATAAGCTGATAGATGGCTCTGGAGAGCCATTTTTTGTTCTCAACAGTGATGTTAT
CAGCGAGTACCCACTTGAAGAAATGATTGAATTCCATAAAAGCCATGGAGGAGAAGCTTC
CATAATGGTAACAAAGGTTGACGAGCCATCGAAATATGGTGTGGTTGTGATGGAGGAGTC
CACCGGGCAGGTTGAGAAATTTGTTGAAAAACCAAAACTGTTTGTTGGTAACAAAATCAA
TGCTGGAATGTATCTGCTGAACCCGTCTGTTCTGGACCGAATTGAGCTG

Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC011891A_C01 KMC011891A_c01
         (709 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_181507.1| GDP-mannose  pyrophosphorylase; protein id: At2...   267  1e-91
emb|CAC35355.1| GDP-mannose pyrophosphorylase [Arabidopsis thali...   266  4e-91
gb|AAD01737.1| GDP-mannose pyrophosphorylase [Solanum tuberosum]      266  2e-90
dbj|BAB64272.1| putative GDP-mannose pyrophosphorylase [Oryza sa...   261  1e-89
dbj|BAB62108.1| GDP-D-mannose pyrophosphorylase [Nicotiana tabacum]   263  2e-89

>ref|NP_181507.1| GDP-mannose  pyrophosphorylase; protein id: At2g39770.1, supported
           by cDNA: 37775., supported by cDNA: gi_13605662,
           supported by cDNA: gi_15982867, supported by cDNA:
           gi_16226304, supported by cDNA: gi_3598957, supported by
           cDNA: gi_4151924 [Arabidopsis thaliana]
           gi|7448154|pir||T01007 mannose-1-phosphate
           guanylyltransferase (EC 2.7.7.13) - Arabidopsis thaliana
           gi|2642159|gb|AAB87126.1| GDP-mannose  pyrophosphorylase
           [Arabidopsis thaliana] gi|3598958|gb|AAC78474.1|
           GDP-mannose pyrophosphorylase [Arabidopsis thaliana]
           gi|4151925|gb|AAD04627.1| CYT1 protein [Arabidopsis
           thaliana] gi|13605663|gb|AAK32825.1|AF361812_1
           At2g39770/T5I7.7 [Arabidopsis thaliana]
           gi|15982868|gb|AAL09781.1| At2g39770/T5I7.7 [Arabidopsis
           thaliana] gi|16226305|gb|AAL16129.1|AF428297_1
           At2g39770/T5I7.7 [Arabidopsis thaliana]
           gi|21593286|gb|AAM65235.1| GDP-mannose
           pyrophosphorylase [Arabidopsis thaliana]
           gi|22137256|gb|AAM91473.1| At2g39770/T5I7.7 [Arabidopsis
           thaliana] gi|23397114|gb|AAN31841.1| putative
           GDP-mannose pyrophosphorylase [Arabidopsis thaliana]
          Length = 361

 Score =  267 bits (683), Expect(2) = 1e-91
 Identities = 133/149 (89%), Positives = 144/149 (96%)
 Frame = +2

Query: 263 LRPLELLEVVLAINYQPEVMLNFLKDFEAKLGIKISCSQETEPLGTAGPLALARDKLIDG 442
           L+ + + EVVLAINYQPEVMLNFLKDFE KL IKI+CSQETEPLGTAGPLALARDKL+DG
Sbjct: 41  LKAVGVDEVVLAINYQPEVMLNFLKDFETKLEIKITCSQETEPLGTAGPLALARDKLLDG 100

Query: 443 SGEPFFVLNSDVISEYPLEEMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGQVEKF 622
           SGEPFFVLNSDVISEYPL+EM+EFHKSHGGEASIMVTKVDEPSKYGVVVMEESTG+VEKF
Sbjct: 101 SGEPFFVLNSDVISEYPLKEMLEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGRVEKF 160

Query: 623 VEKPKLFVGNKINAGMYLLNPSVLDRIEL 709
           VEKPKL+VGNKINAG+YLLNPSVLD+IEL
Sbjct: 161 VEKPKLYVGNKINAGIYLLNPSVLDKIEL 189

 Score = 91.7 bits (226), Expect(2) = 1e-91
 Identities = 45/46 (97%), Positives = 45/46 (97%)
 Frame = +1

Query: 142 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAAGV 279
           MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKA GV
Sbjct: 1   MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAVGV 46

>emb|CAC35355.1| GDP-mannose pyrophosphorylase [Arabidopsis thaliana]
          Length = 361

 Score =  266 bits (679), Expect(2) = 4e-91
 Identities = 132/149 (88%), Positives = 144/149 (96%)
 Frame = +2

Query: 263 LRPLELLEVVLAINYQPEVMLNFLKDFEAKLGIKISCSQETEPLGTAGPLALARDKLIDG 442
           L+ + + EVVLAINYQPEVMLNFLKDFE KL IKI+CSQETEPLGTAGPLALARDKL+DG
Sbjct: 41  LKAVGVDEVVLAINYQPEVMLNFLKDFETKLEIKITCSQETEPLGTAGPLALARDKLLDG 100

Query: 443 SGEPFFVLNSDVISEYPLEEMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGQVEKF 622
           SGEPFFVLNSDVISEYPL+E++EFHKSHGGEASIMVTKVDEPSKYGVVVMEESTG+VEKF
Sbjct: 101 SGEPFFVLNSDVISEYPLKEILEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGRVEKF 160

Query: 623 VEKPKLFVGNKINAGMYLLNPSVLDRIEL 709
           VEKPKL+VGNKINAG+YLLNPSVLD+IEL
Sbjct: 161 VEKPKLYVGNKINAGIYLLNPSVLDKIEL 189

 Score = 91.7 bits (226), Expect(2) = 4e-91
 Identities = 45/46 (97%), Positives = 45/46 (97%)
 Frame = +1

Query: 142 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAAGV 279
           MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKA GV
Sbjct: 1   MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAVGV 46

>gb|AAD01737.1| GDP-mannose pyrophosphorylase [Solanum tuberosum]
          Length = 361

 Score =  266 bits (680), Expect(2) = 2e-90
 Identities = 132/149 (88%), Positives = 142/149 (94%)
 Frame = +2

Query: 263 LRPLELLEVVLAINYQPEVMLNFLKDFEAKLGIKISCSQETEPLGTAGPLALARDKLIDG 442
           L+ + + EVVLAINYQPEVMLNFLK+FEA LGIKI+CSQETEPLGTAGPLALARDKLID 
Sbjct: 41  LKAVGVTEVVLAINYQPEVMLNFLKEFEASLGIKITCSQETEPLGTAGPLALARDKLIDD 100

Query: 443 SGEPFFVLNSDVISEYPLEEMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGQVEKF 622
           SGEPFFVLNSDVISEYP +EMI+FHKSHGGEAS+MVTKVDEPSKYGVVVMEESTGQVE+F
Sbjct: 101 SGEPFFVLNSDVISEYPFKEMIQFHKSHGGEASLMVTKVDEPSKYGVVVMEESTGQVERF 160

Query: 623 VEKPKLFVGNKINAGMYLLNPSVLDRIEL 709
           VEKPKLFVGNKINAG YLLNPSVLDRI+L
Sbjct: 161 VEKPKLFVGNKINAGFYLLNPSVLDRIQL 189

 Score = 89.4 bits (220), Expect(2) = 2e-90
 Identities = 44/47 (93%), Positives = 45/47 (95%)
 Frame = +1

Query: 142 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAAGVT 282
           MKALILVGGFGTRLRPLTLS PKPLV+FANKPMILHQIEALKA GVT
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVT 47

>dbj|BAB64272.1| putative GDP-mannose pyrophosphorylase [Oryza sativa (japonica
           cultivar-group)] gi|20160631|dbj|BAB89577.1| putative
           GDP-mannose pyrophosphorylase [Oryza sativa (japonica
           cultivar-group)]
          Length = 361

 Score =  261 bits (666), Expect(2) = 1e-89
 Identities = 129/149 (86%), Positives = 140/149 (93%)
 Frame = +2

Query: 263 LRPLELLEVVLAINYQPEVMLNFLKDFEAKLGIKISCSQETEPLGTAGPLALARDKLIDG 442
           L+ + + EVVLAINY+PEVMLNFLKDFE KLGI I+CSQETEPLGTAGPLALARDKL+DG
Sbjct: 41  LKEVGVTEVVLAINYRPEVMLNFLKDFEDKLGITITCSQETEPLGTAGPLALARDKLVDG 100

Query: 443 SGEPFFVLNSDVISEYPLEEMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGQVEKF 622
           SGEPFFVLNSDVISEYP  E+I+FHKSHGGEA+IMVTKVDEPSKYGVVVMEE TG VEKF
Sbjct: 101 SGEPFFVLNSDVISEYPFAELIKFHKSHGGEATIMVTKVDEPSKYGVVVMEEVTGMVEKF 160

Query: 623 VEKPKLFVGNKINAGMYLLNPSVLDRIEL 709
           VEKPK+FVGNKINAG+YLLNPSVLDRIEL
Sbjct: 161 VEKPKIFVGNKINAGIYLLNPSVLDRIEL 189

 Score = 91.7 bits (226), Expect(2) = 1e-89
 Identities = 45/47 (95%), Positives = 45/47 (95%)
 Frame = +1

Query: 142 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAAGVT 282
           MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALK  GVT
Sbjct: 1   MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKEVGVT 47

>dbj|BAB62108.1| GDP-D-mannose pyrophosphorylase [Nicotiana tabacum]
          Length = 361

 Score =  263 bits (671), Expect(2) = 2e-89
 Identities = 131/149 (87%), Positives = 140/149 (93%)
 Frame = +2

Query: 263 LRPLELLEVVLAINYQPEVMLNFLKDFEAKLGIKISCSQETEPLGTAGPLALARDKLIDG 442
           L+ + + EVVLAINYQPE MLNFLK+FEA LGIKI+CSQETEPLGTAGPLALARDKLID 
Sbjct: 41  LKAVGVTEVVLAINYQPEEMLNFLKEFEANLGIKITCSQETEPLGTAGPLALARDKLIDD 100

Query: 443 SGEPFFVLNSDVISEYPLEEMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGQVEKF 622
           SGEPFFVLNSDVISEYP +EMI FHKSHGGEAS+MVTKVDEPSKYGVVVMEESTGQVE+F
Sbjct: 101 SGEPFFVLNSDVISEYPFKEMIAFHKSHGGEASLMVTKVDEPSKYGVVVMEESTGQVERF 160

Query: 623 VEKPKLFVGNKINAGMYLLNPSVLDRIEL 709
           VEKPKLFVGNKINAG YLLNPSVLDRI+L
Sbjct: 161 VEKPKLFVGNKINAGFYLLNPSVLDRIQL 189

 Score = 89.4 bits (220), Expect(2) = 2e-89
 Identities = 44/47 (93%), Positives = 45/47 (95%)
 Frame = +1

Query: 142 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAAGVT 282
           MKALILVGGFGTRLRPLTLS PKPLV+FANKPMILHQIEALKA GVT
Sbjct: 1   MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVT 47

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 625,554,343
Number of Sequences: 1393205
Number of extensions: 14142644
Number of successful extensions: 52169
Number of sequences better than 10.0: 793
Number of HSP's better than 10.0 without gapping: 49623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51939
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32373034405
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

	clone	accession	position
1	SPD024b02_f	BP045869	1	378
2	MPD046h09_f	AV773147	182	709

Lotus japonicus
Kazusa DNA Research Institute