Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011890A_C01 KMC011890A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal precursor... 258 5e-68
sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal precursor... 257 6e-68
pir||T09263 malate dehydrogenase (EC 1.1.1.37) precursor, glyoxy... 256 2e-67
sp|P37228|MDHG_SOYBN Malate dehydrogenase, glyoxysomal precursor 248 4e-65
gb|AAC37464.1| malate dehydrogenase 244 4e-64
>sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal precursor gi|319832|pir||DEPUGW
malate dehydrogenase (EC 1.1.1.37) precursor,
glyoxysomal - watermelon gi|167284|gb|AAA33041.1|
glyoxysomal malate dehydrogenase precursor (EC 1.1.1.37)
Length = 356
Score = 258 bits (658), Expect = 5e-68
Identities = 127/155 (81%), Positives = 140/155 (89%), Gaps = 1/155 (0%)
Frame = +1
Query: 100 MEPNSDANQRIAMIAAHLNPPNLMMEDAS-LRTAHCRAKGGAPGFKVAILGAAGGIGQPL 276
M+P D NQRIA I+AHL+PP ME++S LR A+CRAKGGAPGFKVAILGAAGGIGQPL
Sbjct: 1 MQPIPDVNQRIARISAHLHPPKSQMEESSALRRANCRAKGGAPGFKVAILGAAGGIGQPL 60
Query: 277 AMLMKMNPLVSVLHLYDVVNTPGVTSDISHMDTGAVVRGWWGQKQLEDAWIGMDLVIIPA 456
AMLMKMNPLVSVLHLYDVVN PGVT+DISHMDTGAVVRG+ GQ+QLE A GMDL+I+PA
Sbjct: 61 AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA 120
Query: 457 GVPRKPGMTRDDLFNINAGMVKTLCEGIAKCCPKA 561
GVPRKPGMTRDDLF INAG+VKTLCEGIAKCCP+A
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRA 155
>sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal precursor gi|1076276|pir||S52039
malate dehydrogenase (EC 1.1.1.37) - cucumber
gi|695311|gb|AAC41647.1| glyoxysomal malate
dehydrogenase
Length = 356
Score = 257 bits (657), Expect = 6e-68
Identities = 128/155 (82%), Positives = 139/155 (89%), Gaps = 1/155 (0%)
Frame = +1
Query: 100 MEPNSDANQRIAMIAAHLNPPNLMMEDAS-LRTAHCRAKGGAPGFKVAILGAAGGIGQPL 276
M+P D NQRIA I+AHL+PP ME++S LR A+CRAKGGAPGFKVAILGAAGGIGQPL
Sbjct: 1 MQPIPDVNQRIARISAHLHPPKYQMEESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPL 60
Query: 277 AMLMKMNPLVSVLHLYDVVNTPGVTSDISHMDTGAVVRGWWGQKQLEDAWIGMDLVIIPA 456
AMLMKMNPLVSVLHLYDVVN PGVT+DISHMDTGAVVRG+ GQ+QLE A GMDLV+IPA
Sbjct: 61 AMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPA 120
Query: 457 GVPRKPGMTRDDLFNINAGMVKTLCEGIAKCCPKA 561
GVPRKPGMTRDDLF INAG+VKTLCEGIAKCCP A
Sbjct: 121 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTA 155
>pir||T09263 malate dehydrogenase (EC 1.1.1.37) precursor, glyoxysomal - alfalfa
gi|2827078|gb|AAB99754.1| malate dehydrogenase precursor
[Medicago sativa]
Length = 358
Score = 256 bits (653), Expect = 2e-67
Identities = 130/157 (82%), Positives = 136/157 (85%), Gaps = 3/157 (1%)
Frame = +1
Query: 100 MEPNSDANQRIAMIAAHLNPPNLMMED---ASLRTAHCRAKGGAPGFKVAILGAAGGIGQ 270
MEPNS AN RI IA+HLNPPNL M + +SL HCRAKGG PGFKVAILGAAGGIGQ
Sbjct: 1 MEPNSYANSRITRIASHLNPPNLKMNEHGGSSLTNVHCRAKGGTPGFKVAILGAAGGIGQ 60
Query: 271 PLAMLMKMNPLVSVLHLYDVVNTPGVTSDISHMDTGAVVRGWWGQKQLEDAWIGMDLVII 450
PL+MLMKMN LVSVLHLYDVVNTPGVTSDISHMDT AVVRG+ GQ QLEDA GMDLVII
Sbjct: 61 PLSMLMKMNLLVSVLHLYDVVNTPGVTSDISHMDTSAVVRGFLGQNQLEDALTGMDLVII 120
Query: 451 PAGVPRKPGMTRDDLFNINAGMVKTLCEGIAKCCPKA 561
PAGVPRKPGMTRDDLFNINAG+VKTLCE IAK CPKA
Sbjct: 121 PAGVPRKPGMTRDDLFNINAGIVKTLCEAIAKRCPKA 157
>sp|P37228|MDHG_SOYBN Malate dehydrogenase, glyoxysomal precursor
Length = 353
Score = 248 bits (633), Expect = 4e-65
Identities = 125/154 (81%), Positives = 134/154 (86%)
Frame = +1
Query: 100 MEPNSDANQRIAMIAAHLNPPNLMMEDASLRTAHCRAKGGAPGFKVAILGAAGGIGQPLA 279
ME NS A+ RI+ IA HL P +D L+ + CRAKGG GFKVAILGAAGGIGQPLA
Sbjct: 1 MEANSGASDRISRIAGHLRPQR--EDDVCLKRSDCRAKGGVSGFKVAILGAAGGIGQPLA 58
Query: 280 MLMKMNPLVSVLHLYDVVNTPGVTSDISHMDTGAVVRGWWGQKQLEDAWIGMDLVIIPAG 459
MLMKMNPLVS+LHLYDVVNTPGVTSDISHMDTGAVVRG+ GQ+QLEDA IGMDLVIIPAG
Sbjct: 59 MLMKMNPLVSLLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEDALIGMDLVIIPAG 118
Query: 460 VPRKPGMTRDDLFNINAGMVKTLCEGIAKCCPKA 561
VPRKPGMTRDDLFNINAG+VKTLCE IAKCCPKA
Sbjct: 119 VPRKPGMTRDDLFNINAGIVKTLCEAIAKCCPKA 152
>gb|AAC37464.1| malate dehydrogenase
Length = 350
Score = 244 bits (624), Expect = 4e-64
Identities = 123/151 (81%), Positives = 132/151 (86%)
Frame = +1
Query: 109 NSDANQRIAMIAAHLNPPNLMMEDASLRTAHCRAKGGAPGFKVAILGAAGGIGQPLAMLM 288
NS A+ RI+ IA HL P +D L+ + CRAKGG GFKVAILGAAGGIGQPLAMLM
Sbjct: 1 NSGASDRISRIAGHLRPQR--EDDVCLKRSDCRAKGGVSGFKVAILGAAGGIGQPLAMLM 58
Query: 289 KMNPLVSVLHLYDVVNTPGVTSDISHMDTGAVVRGWWGQKQLEDAWIGMDLVIIPAGVPR 468
KMNPLVS+LHLYDVVNTPGVTSDISHMDTGAVVRG+ GQ+QLEDA IGMDLVIIPAGVPR
Sbjct: 59 KMNPLVSLLHLYDVVNTPGVTSDISHMDTGAVVRGFLGQQQLEDALIGMDLVIIPAGVPR 118
Query: 469 KPGMTRDDLFNINAGMVKTLCEGIAKCCPKA 561
KPGMTRDDLFNINAG+VKTLCE IAKCCPKA
Sbjct: 119 KPGMTRDDLFNINAGIVKTLCEAIAKCCPKA 149
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,610,996
Number of Sequences: 1393205
Number of extensions: 12800956
Number of successful extensions: 38679
Number of sequences better than 10.0: 405
Number of HSP's better than 10.0 without gapping: 36612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38424
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
