Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011878A_C01 KMC011878A_c01
(642 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO17573.1| carbonic anhydrase 2 [Flaveria bidentis] 119 2e-27
sp|P46513|CAH2_FLALI CARBONIC ANHYDRASE 2 (CARBONATE DEHYDRATASE... 113 8e-27
ref|NP_173785.1| putative carbonic anhydrase; protein id: At1g23... 110 3e-26
gb|AAD27876.2|AF139464_1 carbonic anhydrase [Vigna radiata] 106 5e-25
gb|AAO17574.1| carbonic anhydrase 3 [Flaveria bidentis] 107 9e-25
>gb|AAO17573.1| carbonic anhydrase 2 [Flaveria bidentis]
Length = 279
Score = 119 bits (297), Expect(2) = 2e-27
Identities = 57/81 (70%), Positives = 64/81 (78%)
Frame = -1
Query: 642 DDGTTASDFIEQWVQICNPAKSKVKTDTGSLSFSEQCTNCEKEAVNVSLGNLLTYPFVKE 463
DDGTTASDFIEQWV+I PAKSKVK D L +S+ CT CEKEAVNVSLGNLLTYPFV+E
Sbjct: 184 DDGTTASDFIEQWVKIGLPAKSKVKADCSDLEYSDLCTKCEKEAVNVSLGNLLTYPFVRE 243
Query: 462 RVIDKPLALKGAHYPFCYWQF 400
++K L+LKGAHY F F
Sbjct: 244 AALNKKLSLKGAHYDFVNGSF 264
Score = 25.8 bits (55), Expect(2) = 2e-27
Identities = 10/19 (52%), Positives = 13/19 (67%)
Frame = -2
Query: 416 FVTGNFELWDLNFKVQPSI 360
FV G+F+LW+LN SI
Sbjct: 259 FVNGSFDLWNLNIGFSSSI 277
>sp|P46513|CAH2_FLALI CARBONIC ANHYDRASE 2 (CARBONATE DEHYDRATASE 2)
gi|7436821|pir||T10740 carbonate dehydratase (EC
4.2.1.1) 2, chloroplast - Flaveria linearis (fragment)
gi|882244|gb|AAA86994.1| carbonic anhydrase 2
Length = 190
Score = 113 bits (283), Expect(2) = 8e-27
Identities = 52/76 (68%), Positives = 64/76 (83%)
Frame = -1
Query: 642 DDGTTASDFIEQWVQICNPAKSKVKTDTGSLSFSEQCTNCEKEAVNVSLGNLLTYPFVKE 463
DDGT ASDFIEQWV++ PAKSKVK + +L F++ CT CEKEAVNVSLGNLLTYPFV++
Sbjct: 95 DDGTPASDFIEQWVKLGLPAKSKVKANCNNLEFADLCTKCEKEAVNVSLGNLLTYPFVRD 154
Query: 462 RVIDKPLALKGAHYPF 415
+++K L+LKGAHY F
Sbjct: 155 ALVNKKLSLKGAHYDF 170
Score = 28.9 bits (63), Expect(2) = 8e-27
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 416 FVTGNFELWDLNFKVQPSI 360
FV G F+LW+L+F + PS+
Sbjct: 170 FVNGAFDLWNLDFGISPSL 188
>ref|NP_173785.1| putative carbonic anhydrase; protein id: At1g23730.1, supported by
cDNA: gi_19698836 [Arabidopsis thaliana]
gi|25291481|pir||D86371 hypothetical protein F5O8.28 -
Arabidopsis thaliana gi|4056455|gb|AAC98028.1| Similar
to gb|L19255 carbonic anhydrase from Nicotiana tabacum
and a member of the prokaryotic-type carbonic anhydrase
family PF|00484. EST gb|Z235745 comes from this gene.
[Arabidopsis thaliana] gi|19698837|gb|AAL91154.1|
putative carbonic anhydrase [Arabidopsis thaliana]
gi|21386933|gb|AAM47870.1| putative carbonic anhydrase
[Arabidopsis thaliana]
Length = 258
Score = 110 bits (276), Expect(2) = 3e-26
Identities = 48/72 (66%), Positives = 60/72 (82%)
Frame = -1
Query: 630 TASDFIEQWVQICNPAKSKVKTDTGSLSFSEQCTNCEKEAVNVSLGNLLTYPFVKERVID 451
T ++FIE W+QIC PAK+++K D LSF +QCTNCEKEAVNVSLGNLL+YPFV+ERV+
Sbjct: 166 TKTEFIENWIQICAPAKNRIKQDCKDLSFEDQCTNCEKEAVNVSLGNLLSYPFVRERVVK 225
Query: 450 KPLALKGAHYPF 415
LA++GAHY F
Sbjct: 226 NKLAIRGAHYDF 237
Score = 29.6 bits (65), Expect(2) = 3e-26
Identities = 10/21 (47%), Positives = 16/21 (75%)
Frame = -2
Query: 416 FVTGNFELWDLNFKVQPSISV 354
FV G F+LW+L+FK P+ ++
Sbjct: 237 FVKGTFDLWELDFKTTPAFAL 257
>gb|AAD27876.2|AF139464_1 carbonic anhydrase [Vigna radiata]
Length = 328
Score = 106 bits (264), Expect(2) = 5e-25
Identities = 49/75 (65%), Positives = 62/75 (82%)
Frame = -1
Query: 639 DGTTASDFIEQWVQICNPAKSKVKTDTGSLSFSEQCTNCEKEAVNVSLGNLLTYPFVKER 460
DGT ++DFIE+WV+I PAK+KVKT G F+E CT+CEKEAVNVSLGNLLTYPFV++
Sbjct: 234 DGTYSTDFIEEWVKIGLPAKAKVKTQHGDAPFAELCTHCEKEAVNVSLGNLLTYPFVRDG 293
Query: 459 VIDKPLALKGAHYPF 415
+++K LALKG +Y F
Sbjct: 294 LVNKTLALKGGYYDF 308
Score = 30.0 bits (66), Expect(2) = 5e-25
Identities = 13/21 (61%), Positives = 14/21 (65%)
Frame = -2
Query: 416 FVTGNFELWDLNFKVQPSISV 354
FV G FELW LNF + S SV
Sbjct: 308 FVKGTFELWSLNFGLASSFSV 328
>gb|AAO17574.1| carbonic anhydrase 3 [Flaveria bidentis]
Length = 258
Score = 107 bits (266), Expect(2) = 9e-25
Identities = 49/76 (64%), Positives = 61/76 (79%)
Frame = -1
Query: 642 DDGTTASDFIEQWVQICNPAKSKVKTDTGSLSFSEQCTNCEKEAVNVSLGNLLTYPFVKE 463
D+G T++DFIE WV++ PAKSKVK + GS S +QC +CEKEAVNVSL NLLTYPFV+
Sbjct: 163 DEGPTSTDFIEDWVKVGLPAKSKVKAEHGSASIDDQCVSCEKEAVNVSLANLLTYPFVRN 222
Query: 462 RVIDKPLALKGAHYPF 415
+I+K LA+KGAHY F
Sbjct: 223 GLINKTLAIKGAHYDF 238
Score = 28.5 bits (62), Expect(2) = 9e-25
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 416 FVTGNFELWDLNFKVQPSIS 357
FV G FELW L F + P+ S
Sbjct: 238 FVNGTFELWALEFSLSPTTS 257
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,056,908
Number of Sequences: 1393205
Number of extensions: 9850085
Number of successful extensions: 20401
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 19947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20397
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
