KMC011870A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC011870A_C01 KMC011870A_c01
aatcatcacaaataacatatctataaatataacaaaataTGAAGTTAAAATGTGCTCTAT
TAATTTTTCAATCAACTGTTATCATTTTTATATTTTTTTTCCCTCTGAAGTGCTTTTCTC
ACTTCAAAGAAGCAAATTCATAAATTATATAACATACTCTAAGAATTTTGTAGAAGAAAT
TAAGTTAATCTCCAAGATGGCCCATTAGAAATAGATACTATACCCCTGACAGGAACTTCT
ACAAGAGATATGACACAGCATTCATTATTCATGTTGCCTGTTGCTAGGGCCTGCTCCGCT
TCATGCTGCATGATGGGCATTTGTACTGCTTTATGCTCTCAGCCTTTGCAGGAGTAATCT
TCACACATTTTCCATGGTACCACCTCTCACACACATCACATCCAATCCAGAATTCATCCG
CATTGTAATTTCCGCCGCAGCTCCCACAGAGGGTTTCGCTATGCTCATCTTCATCCTCCT
CATAACCTTCATCTGCGAACTTTGGGTTGCTGCTTTTAACTTGCCCATCACTTGATCTCT
TGGTGCCACCCCGAGATTTGCTTCCACTGTCTACAGTGGGCTTGTCTTTTATTGGCTTCC
TCTCAGTGACAACTTCAAAAACGGTGGGAAGATCATTGATCAAGCTAAATAGCCGTTTCC
TTTCATTGCGGTTAAGACGAGCTCCAAGATAAAATGCCACAGAAAGCAACCACGAATCAC
TGTGCACGGCAACCAGAGAAAGCCAGTCCCTACGGTTCATTCCATCCCTAGCAAAATTGA
TTCCGAGAGCAGGCTCCGGAAGCTCAGGTGGAACCTCCTCTGCTGGCAGAGTCACCTCCC
ATGATTCATTTGGATGTCCATAGAGGCACAGGTTCTCCTTATCTGGATCACAGAGTCCAT
AGAATTCATCAACATCTTGAGTTAAAGCACGAAGGATGGCATCTCTGCGAGCGGTGTAGT
CCTTGAAGATCTCTTCAACGGTGCGGGGACTGGACGCCATTGAATTGAGATCTGAGAGAG
AATTAGGGTTCGGTTGGTTCTAgaaagaggggtgagggtgcatgagaagaagagatcgca
gatgcatgtgatgatgatgatgatgatgatgatgatgatagt
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011870A_C01 KMC011870A_c01
(1122 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187729.1| putative nucleic acid binding protein; protein ... 407 e-112
ref|NP_196180.1| nucleic acid binding protein-like; protein id: ... 394 e-108
gb|AAO60037.1| putative PHD-finger domain containing protein [Or... 375 e-103
gb|AAO65855.1| putative PHD-type zinc finger protein [Oryza sati... 375 e-103
dbj|BAC21510.1| putative nucleic acid binding protein [Oryza sat... 370 e-101
>ref|NP_187729.1| putative nucleic acid binding protein; protein id: At3g11200.1,
supported by cDNA: 13297., supported by cDNA: gi_16604429
[Arabidopsis thaliana]
gi|6016679|gb|AAF01506.1|AC009991_2 putative nucleic acid
binding protein [Arabidopsis thaliana]
gi|12321890|gb|AAG50986.1|AC073395_28 PHD-finger protein,
putative; 47584-45553 [Arabidopsis thaliana]
gi|16604430|gb|AAL24221.1| At3g11200/F11B9.12
[Arabidopsis thaliana] gi|21537350|gb|AAM61691.1|
putative nucleic acid binding protein [Arabidopsis
thaliana] gi|23505823|gb|AAN28771.1| At3g11200/F11B9.12
[Arabidopsis thaliana]
Length = 246
Score = 407 bits (1045), Expect = e-112
Identities = 192/241 (79%), Positives = 213/241 (87%), Gaps = 3/241 (1%)
Frame = -3
Query: 1003 SMASSPRTVEEIFKDYTARRDAILRALTQDVDEFYGLCDPDKENLCLYGHPNESWEVTLP 824
+++S+PRTVEEIFKDY+ARR A+LRALT+DVD+FY CDP+KENLCLYGHPNESWEV LP
Sbjct: 5 AVSSNPRTVEEIFKDYSARRAALLRALTKDVDDFYSQCDPEKENLCLYGHPNESWEVNLP 64
Query: 823 AEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFS 644
AEEVPPELPEPALGINFARDGM R+DWLSLVAVHSD WLLSV+FY GARLNRNERKRLFS
Sbjct: 65 AEEVPPELPEPALGINFARDGMQRKDWLSLVAVHSDCWLLSVSFYFGARLNRNERKRLFS 124
Query: 643 LINDLPTVFEVVTERKPIKD-KPTVDSGSKSRGGTKRSSDGQVKSSNPKFADEGY--EED 473
LINDLPT+F+VVT RK +KD KP+ DSGSKSR GTKRS DGQ KSS PK +E Y EE+
Sbjct: 125 LINDLPTLFDVVTGRKAMKDNKPSSDSGSKSRNGTKRSIDGQTKSSTPKLMEESYEEEEE 184
Query: 472 EDEHSETLCGSCGGNYNADEFWIGCDVCERWYHGKCVKITPAKAESIKQYKCPSCSMKRS 293
EDEH +TLCGSCGG+Y +EFWI CDVCERWYHGKCVKITPAKAESIKQYKCP C K+
Sbjct: 185 EDEHGDTLCGSCGGHYTNEEFWICCDVCERWYHGKCVKITPAKAESIKQYKCPPCCAKKG 244
Query: 292 R 290
R
Sbjct: 245 R 245
>ref|NP_196180.1| nucleic acid binding protein-like; protein id: At5g05610.1,
supported by cDNA: 111750. [Arabidopsis thaliana]
gi|10178138|dbj|BAB11550.1| nucleic acid binding
protein-like [Arabidopsis thaliana]
gi|21536795|gb|AAM61127.1| nucleic acid binding
protein-like [Arabidopsis thaliana]
Length = 241
Score = 394 bits (1013), Expect = e-108
Identities = 185/237 (78%), Positives = 206/237 (86%), Gaps = 1/237 (0%)
Frame = -3
Query: 997 ASSPRTVEEIFKDYTARRDAILRALTQDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAE 818
+S+PRTVEEIFKD++ RR LRAL+ DVD+FY LCDP+ ENLCLYGHPN +WEV LPAE
Sbjct: 5 SSNPRTVEEIFKDFSGRRSGFLRALSVDVDKFYSLCDPEMENLCLYGHPNGTWEVNLPAE 64
Query: 817 EVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLI 638
EVPPELPEPALGINFARDGM R+DWLSLVAVHSD WLLSV+ Y GARLNRNERKRLFSLI
Sbjct: 65 EVPPELPEPALGINFARDGMQRKDWLSLVAVHSDCWLLSVSSYFGARLNRNERKRLFSLI 124
Query: 637 NDLPTVFEVVTERKPIKD-KPTVDSGSKSRGGTKRSSDGQVKSSNPKFADEGYEEDEDEH 461
NDLPT+FEVVT RKPIKD KP++D GSKSR G KRS +GQ KS+ PK +E YE+++DEH
Sbjct: 125 NDLPTLFEVVTGRKPIKDGKPSMDLGSKSRNGVKRSIEGQTKST-PKLMEESYEDEDDEH 183
Query: 460 SETLCGSCGGNYNADEFWIGCDVCERWYHGKCVKITPAKAESIKQYKCPSCSMKRSR 290
+TLCGSCGGNY DEFWI CDVCERWYHGKCVKITPAKAESIKQYKCPSC K+ R
Sbjct: 184 GDTLCGSCGGNYTNDEFWICCDVCERWYHGKCVKITPAKAESIKQYKCPSCCTKKGR 240
>gb|AAO60037.1| putative PHD-finger domain containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 247
Score = 375 bits (964), Expect = e-103
Identities = 172/237 (72%), Positives = 203/237 (85%)
Frame = -3
Query: 1000 MASSPRTVEEIFKDYTARRDAILRALTQDVDEFYGLCDPDKENLCLYGHPNESWEVTLPA 821
+AS+PRTVE+IFKDY+ARR A++RALT DVDEF+GLCDPDKENLCLYG N SWEV LPA
Sbjct: 9 VASNPRTVEDIFKDYSARRGALVRALTSDVDEFFGLCDPDKENLCLYGLANGSWEVALPA 68
Query: 820 EEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSL 641
EEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWL+SVAF+ ARLN NERKRLF++
Sbjct: 69 EEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLVSVAFFFAARLNGNERKRLFNM 128
Query: 640 INDLPTVFEVVTERKPIKDKPTVDSGSKSRGGTKRSSDGQVKSSNPKFADEGYEEDEDEH 461
INDLPTV+E + +RK ++D+ VDS KS+ TKR+ +GQVK S + E YE+D++EH
Sbjct: 129 INDLPTVYEALVDRKHVRDRSGVDSSGKSKHSTKRTGEGQVKRS--RVVAEEYEDDDEEH 186
Query: 460 SETLCGSCGGNYNADEFWIGCDVCERWYHGKCVKITPAKAESIKQYKCPSCSMKRSR 290
+ET CG+CGG YNA+EFWIGCD+CERW+HGKCV+ITPAKAE IK YKCP CS S+
Sbjct: 187 NETFCGTCGGLYNANEFWIGCDICERWFHGKCVRITPAKAEHIKHYKCPDCSSSSSK 243
>gb|AAO65855.1| putative PHD-type zinc finger protein [Oryza sativa (japonica
cultivar-group)]
Length = 245
Score = 375 bits (964), Expect = e-103
Identities = 172/237 (72%), Positives = 203/237 (85%)
Frame = -3
Query: 1000 MASSPRTVEEIFKDYTARRDAILRALTQDVDEFYGLCDPDKENLCLYGHPNESWEVTLPA 821
+AS+PRTVE+IFKDY+ARR A++RALT DVDEF+GLCDPDKENLCLYG N SWEV LPA
Sbjct: 7 VASNPRTVEDIFKDYSARRGALVRALTSDVDEFFGLCDPDKENLCLYGLANGSWEVALPA 66
Query: 820 EEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSL 641
EEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWL+SVAF+ ARLN NERKRLF++
Sbjct: 67 EEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLVSVAFFFAARLNGNERKRLFNM 126
Query: 640 INDLPTVFEVVTERKPIKDKPTVDSGSKSRGGTKRSSDGQVKSSNPKFADEGYEEDEDEH 461
INDLPTV+E + +RK ++D+ VDS KS+ TKR+ +GQVK S + E YE+D++EH
Sbjct: 127 INDLPTVYEALVDRKHVRDRSGVDSSGKSKHSTKRTGEGQVKRS--RVVAEEYEDDDEEH 184
Query: 460 SETLCGSCGGNYNADEFWIGCDVCERWYHGKCVKITPAKAESIKQYKCPSCSMKRSR 290
+ET CG+CGG YNA+EFWIGCD+CERW+HGKCV+ITPAKAE IK YKCP CS S+
Sbjct: 185 NETFCGTCGGLYNANEFWIGCDICERWFHGKCVRITPAKAEHIKHYKCPDCSSSSSK 241
>dbj|BAC21510.1| putative nucleic acid binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 244
Score = 370 bits (950), Expect = e-101
Identities = 175/239 (73%), Positives = 202/239 (84%), Gaps = 2/239 (0%)
Frame = -3
Query: 1000 MASSPRTVEEIFKDYTARRDAILRALTQDVDEFYGLCDPDKENLCLYGHPNESWEVTLPA 821
++ +PRTVE+IFKD++ RR ++RALT DVDEFYG CDP+KENLCLYGHPN WEV LPA
Sbjct: 7 VSPAPRTVEDIFKDFSGRRAGLVRALTVDVDEFYGFCDPEKENLCLYGHPNGRWEVALPA 66
Query: 820 EEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSL 641
EEVPPELPEPALGINFARDGM+RRDWLSLVAVHSDSWLLSVAF+ GARLN NERKRLFSL
Sbjct: 67 EEVPPELPEPALGINFARDGMHRRDWLSLVAVHSDSWLLSVAFFFGARLNGNERKRLFSL 126
Query: 640 INDLPTVFEVVTERKPIKD-KPTVDSGSKSRGGTKRSSDGQVKSSNPKFADEGYEEDEDE 464
IND PTV E +++RK +D K D+GSKSR KR++D Q K+S P D+GY DE+E
Sbjct: 127 INDHPTVLEALSDRKHGRDNKSGADNGSKSRHSGKRANDVQTKTSRPAVVDDGY--DEEE 184
Query: 463 HSETLCGSCGGNYNADEFWIGCDVCERWYHGKCVKITPAKAESIKQYKCPSC-SMKRSR 290
HSETLCG+CGG YNA+EFWIGCD+CERW+HGKCV+ITPAKAE IK YKCP C S K+SR
Sbjct: 185 HSETLCGTCGGRYNANEFWIGCDICERWFHGKCVRITPAKAEHIKHYKCPDCSSSKKSR 243
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 980,934,121
Number of Sequences: 1393205
Number of extensions: 23604878
Number of successful extensions: 189013
Number of sequences better than 10.0: 915
Number of HSP's better than 10.0 without gapping: 82706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143882
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 68085578256
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
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clone |
accession |
position |
| 1 |
MPD045b07_f |
AV773037 |
1 |
496 |
| 2 |
SPD044d02_f |
BP047499 |
29 |
542 |
| 3 |
MF078b09_f |
BP032412 |
42 |
422 |
| 4 |
SPD024b04_f |
BP045871 |
43 |
585 |
| 5 |
SPD013h12_f |
BP045075 |
50 |
591 |
| 6 |
MFB073g08_f |
BP039337 |
50 |
579 |
| 7 |
SPD033e12_f |
BP046633 |
61 |
617 |
| 8 |
MFB079d04_f |
BP039773 |
535 |
1122 |
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Lotus japonicus
Kazusa DNA Research Institute