>KMC011864A_C01 KMC011864A_c01
gggcccccctttatataaagatgcttctgtgagagttcaaaattaattatgaggaaagag
tagctaatgcaaacatactaTAAAAGTGACTGTTAAGGTTCCACACCTTGTACAACCAAC
TCAAAAACATTTCTTGATATATCACAAGAGAAACAAATATCTATTATAGTAAATATAGAA
AATAGGTCATGAAGTCTGGGGCAGCTGCTTGAGTGGAGTTCCTGGAATGCTTTCTCAAAT
AGGTACTGAACCTATTGATGTTGAAGTGAGGCTATGGCTTCTAGATAAAGCATGCACTGC
ATGGCCTGATCTTGCCCATCAAAGCTCTATGCTCATCGAAGAAACTTCAGAAAGGGAGAG
AAACAAGATCAGGAGGAAAACACCACCAGCTTATCATCAAATCCTGAGTGCACACTGGAC
AATGCTCATCATCATGGATGCAGCTGCTAAGGTCCATGTATCTCACAAAAGAAGAAAAGC
CTTCTATTCATTCATCCTTGGCCTCCAGTCTGGGCATCCTTATCCAACCCCCAAGACCTG
ATCCTGATTTGAAGCTCAG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC011864A_C01 KMC011864A_c01
         (559 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_506199.1| Putative plasma membrane membrane protein famil...    32  4.0

>ref|NP_506199.1| Putative plasma membrane membrane protein family member, with at
           least 6 transmembrane domains, nematode specific
           [Caenorhabditis elegans] gi|7510781|pir||T27585
           hypothetical protein ZC455.8 - Caenorhabditis elegans
           gi|3881408|emb|CAA99961.1| Hypothetical protein ZC455.8
           [Caenorhabditis elegans]
          Length = 301

 Score = 32.3 bits (72), Expect = 4.0
 Identities = 22/66 (33%), Positives = 30/66 (45%)
 Frame = -3

Query: 227 FQELHSSSCPRLHDLFSIFTIIDICFSCDISRNVFELVVQGVEP*QSLL*YVCISYSFLI 48
           FQ     + P  H LF I  I+DIC+S  +S   F L+V  + P      ++   Y  L 
Sbjct: 34  FQNSLMKNKPEYH-LFKIRFIVDICYSLTVSIYYFSLIVSYISP------FILFQYKSLF 86

Query: 47  INFELS 30
           I   LS
Sbjct: 87  IATLLS 92

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,617,868
Number of Sequences: 1393205
Number of extensions: 10059518
Number of successful extensions: 23455
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23447
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MPD044g07_f AV773012 1 559 2 SPD067d02_f BP049341 123 252

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