Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011853A_C01 KMC011853A_c01
(686 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199351.1| urea active transporter-like protein; protein i... 52 8e-06
gb|AAG46170.1|AC018727_22 putative urea active transport protein... 52 1e-05
gb|EAA29072.1| hypothetical protein [Neurospora crassa] 41 0.018
ref|NP_595871.1| putative urea active transporter [Schizosacchar... 39 0.088
gb|AAA34582.1| Dur3 33 2.8
>ref|NP_199351.1| urea active transporter-like protein; protein id: At5g45380.1
[Arabidopsis thaliana] gi|9758728|dbj|BAB09166.1| urea
active transporter-like protein [Arabidopsis thaliana]
Length = 694
Score = 52.0 bits (123), Expect = 8e-06
Identities = 32/73 (43%), Positives = 38/73 (51%)
Frame = +1
Query: 310 LFSKSKTCKEPKPCSPSVYNRLFVNQVHIRSLCHTMDNLVALLVGITGSYLTMLSSGG*V 489
+ +KS++C EP H C +D GSYLTMLSSGG V
Sbjct: 257 MVAKSRSCTEPLS--------------HHGQACGPVDG------NFRGSYLTMLSSGGAV 296
Query: 490 FGIINIVGNFGTV 528
FG+INIVGNFGTV
Sbjct: 297 FGLINIVGNFGTV 309
Score = 35.0 bits (79), Expect = 0.97
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +3
Query: 363 LQSLVRKPSTYQEPMSHHGQSRGPVSGYHR 452
L+ +V K + EP+SHHGQ+ GPV G R
Sbjct: 254 LKDMVAKSRSCTEPLSHHGQACGPVDGNFR 283
>gb|AAG46170.1|AC018727_22 putative urea active transport protein [Oryza sativa]
Length = 721
Score = 51.6 bits (122), Expect = 1e-05
Identities = 25/26 (96%), Positives = 25/26 (96%)
Frame = +1
Query: 451 GSYLTMLSSGG*VFGIINIVGNFGTV 528
GSYLTMLSSGG VFGIINIVGNFGTV
Sbjct: 289 GSYLTMLSSGGLVFGIINIVGNFGTV 314
>gb|EAA29072.1| hypothetical protein [Neurospora crassa]
Length = 704
Score = 40.8 bits (94), Expect = 0.018
Identities = 35/95 (36%), Positives = 42/95 (43%), Gaps = 5/95 (5%)
Frame = +1
Query: 259 GGRRMTTMTQTYFTFN*L-----FSKSKTCKEPKPCSPSVYNRLFVNQVHIRSLCHTMDN 423
GG + T +T TF L F+ S SPS L V + H +D
Sbjct: 194 GGLKATILTDWIHTFILLIIIIVFALSAYASSEVLGSPSAVYDLLVKA----AAAHPVDG 249
Query: 424 LVALLVGITGSYLTMLSSGG*VFGIINIVGNFGTV 528
GSYLTM S G +F +INIVGNFGTV
Sbjct: 250 ------NHEGSYLTMRSREGAIFFVINIVGNFGTV 278
>ref|NP_595871.1| putative urea active transporter [Schizosaccharomyces pombe]
gi|7493146|pir||T39959 probable urea active transporter
- fission yeast (Schizosaccharomyces pombe)
gi|4106690|emb|CAA22629.1| putative urea active
transporter [Schizosaccharomyces pombe]
Length = 664
Score = 38.5 bits (88), Expect = 0.088
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = +1
Query: 451 GSYLTMLSSGG*VFGIINIVGNFGTV 528
GSYLTM S G +F IIN+ GNFGTV
Sbjct: 242 GSYLTMRSQEGAIFFIINLAGNFGTV 267
>gb|AAA34582.1| Dur3
Length = 735
Score = 33.5 bits (75), Expect = 2.8
Identities = 14/26 (53%), Positives = 18/26 (68%)
Frame = +1
Query: 451 GSYLTMLSSGG*VFGIINIVGNFGTV 528
G Y+TM S + IIN++GNFGTV
Sbjct: 244 GEYMTMTSKSAGILLIINLIGNFGTV 269
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,561,607
Number of Sequences: 1393205
Number of extensions: 11121735
Number of successful extensions: 22899
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 22262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22887
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30835865868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
