Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011850A_C01 KMC011850A_c01
(1010 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563779.1| expressed protein; protein id: At1g07080.1, sup... 96 1e-18
pir||F86205 hypothetical protein [imported] - Arabidopsis thalia... 96 1e-18
gb|AAM65025.1| unknown [Arabidopsis thaliana] 75 2e-12
gb|AAL62341.1| putative protein [Arabidopsis thaliana] 73 6e-12
ref|NP_567395.1| putative protein; protein id: At4g12890.1, supp... 73 6e-12
>ref|NP_563779.1| expressed protein; protein id: At1g07080.1, supported by cDNA:
gi_15146333, supported by cDNA: gi_15809755 [Arabidopsis
thaliana] gi|15146334|gb|AAK83650.1| At1g07080/F10K1_15
[Arabidopsis thaliana] gi|15809756|gb|AAL06806.1|
At1g07080/F10K1_15 [Arabidopsis thaliana]
Length = 265
Score = 95.5 bits (236), Expect = 1e-18
Identities = 44/73 (60%), Positives = 57/73 (77%), Gaps = 1/73 (1%)
Frame = -3
Query: 1005 LDSRP-SDLRYKGEIGKQLELNYAAETEALQPPHTYVPWLVVNGKPLYEDYEKFLSYVCE 829
L+S+P +D G G +L L+YAAET ALQPPH YVPW+VV+G+PLYEDYE F+SY+C+
Sbjct: 147 LNSKPVADCLSSGH-GNELALHYAAETNALQPPHKYVPWVVVDGQPLYEDYENFISYICK 205
Query: 828 AYQGTHKPQSCTK 790
AY+G P +CTK
Sbjct: 206 AYKGNKVPGACTK 218
>pir||F86205 hypothetical protein [imported] - Arabidopsis thaliana
gi|8954038|gb|AAF82212.1|AC067971_20 Contains similarity
to an unknown protein F7A7_100 gi|7327817 from
Arabidopsis thaliana BAC F7A7 gb|AL161946. ESTs
gb|N65842, gb|F19836 and gb|AI993679 come from this gene
Length = 262
Score = 95.5 bits (236), Expect = 1e-18
Identities = 44/73 (60%), Positives = 57/73 (77%), Gaps = 1/73 (1%)
Frame = -3
Query: 1005 LDSRP-SDLRYKGEIGKQLELNYAAETEALQPPHTYVPWLVVNGKPLYEDYEKFLSYVCE 829
L+S+P +D G G +L L+YAAET ALQPPH YVPW+VV+G+PLYEDYE F+SY+C+
Sbjct: 144 LNSKPVADCLSSGH-GNELALHYAAETNALQPPHKYVPWVVVDGQPLYEDYENFISYICK 202
Query: 828 AYQGTHKPQSCTK 790
AY+G P +CTK
Sbjct: 203 AYKGNKVPGACTK 215
>gb|AAM65025.1| unknown [Arabidopsis thaliana]
Length = 232
Score = 74.7 bits (182), Expect = 2e-12
Identities = 34/84 (40%), Positives = 52/84 (61%)
Frame = -3
Query: 978 YKGEIGKQLELNYAAETEALQPPHTYVPWLVVNGKPLYEDYEKFLSYVCEAYQGTHKPQS 799
Y G++ K+L L YA T +L+P H YVPW+ +NGKPLY++Y ++ VC+AY+G P+
Sbjct: 149 YNGDLSKKLILGYAKLTSSLKPKHEYVPWVTLNGKPLYDNYHNLVAQVCKAYKGKDLPKL 208
Query: 798 CTKASYLSSDVKAMPKHSVSDMEE 727
C+ + V K VS ++E
Sbjct: 209 CSSSVLYERKVS---KFQVSYVDE 229
>gb|AAL62341.1| putative protein [Arabidopsis thaliana]
Length = 177
Score = 73.2 bits (178), Expect = 6e-12
Identities = 33/84 (39%), Positives = 52/84 (61%)
Frame = -3
Query: 978 YKGEIGKQLELNYAAETEALQPPHTYVPWLVVNGKPLYEDYEKFLSYVCEAYQGTHKPQS 799
Y G++ ++L L YA T +L+P H YVPW+ +NGKPLY++Y ++ VC+AY+G P+
Sbjct: 94 YNGDLSQKLILGYAKLTSSLKPKHEYVPWVTLNGKPLYDNYHNLVAQVCKAYKGKDLPKL 153
Query: 798 CTKASYLSSDVKAMPKHSVSDMEE 727
C+ + V K VS ++E
Sbjct: 154 CSSSVLYERKVS---KFQVSYVDE 174
>ref|NP_567395.1| putative protein; protein id: At4g12890.1, supported by cDNA:
35907. [Arabidopsis thaliana]
Length = 232
Score = 73.2 bits (178), Expect = 6e-12
Identities = 33/84 (39%), Positives = 52/84 (61%)
Frame = -3
Query: 978 YKGEIGKQLELNYAAETEALQPPHTYVPWLVVNGKPLYEDYEKFLSYVCEAYQGTHKPQS 799
Y G++ ++L L YA T +L+P H YVPW+ +NGKPLY++Y ++ VC+AY+G P+
Sbjct: 149 YNGDLSQKLILGYAKLTSSLKPKHEYVPWVTLNGKPLYDNYHNLVAQVCKAYKGKDLPKL 208
Query: 798 CTKASYLSSDVKAMPKHSVSDMEE 727
C+ + V K VS ++E
Sbjct: 209 CSSSVLYERKVS---KFQVSYVDE 229
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 877,599,195
Number of Sequences: 1393205
Number of extensions: 19935343
Number of successful extensions: 91012
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 43468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76419
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 58497547324
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
