Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011839A_C01 KMC011839A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181151.1| hypothetical protein; protein id: At2g36070.1 [... 125 4e-28
ref|NP_565473.1| putative mitochondrial inner membrane transloca... 125 4e-28
pir||B84590 hypothetical protein At2g20510 [imported] - Arabidop... 125 4e-28
dbj|BAC20728.1| mitochondrial inner membrane translocating prote... 98 9e-20
ref|NP_650786.2| CG11779-PA [Drosophila melanogaster] gi|7300484... 60 2e-08
>ref|NP_181151.1| hypothetical protein; protein id: At2g36070.1 [Arabidopsis
thaliana] gi|25370689|pir||E84776 hypothetical protein
At2g36070 [imported] - Arabidopsis thaliana
gi|20197991|gb|AAM15344.1| hypothetical protein
[Arabidopsis thaliana]
Length = 499
Score = 125 bits (314), Expect = 4e-28
Identities = 54/96 (56%), Positives = 75/96 (77%)
Frame = -2
Query: 585 RCKAEHNAYQSHGIFFDNKILHVSDVDVRETKMLESSPVIVVMFHTQPIHCVRDRHGEIT 406
RC AEH A+ S G FFD+K+LHVS+VD++ETKM+ ++PVI+V F TQ I CVRD+ G+I
Sbjct: 393 RCTAEHRAFTSQGYFFDHKLLHVSEVDIQETKMMGTTPVIIVRFQTQEIFCVRDQDGKIK 452
Query: 405 EGGKDTIHNIFYLWALPQVNQTDNAEDGIYLMWKLQ 298
EGG+DTIH ++Y WA+ QV+ + ED IY +W+L+
Sbjct: 453 EGGQDTIHTVYYDWAMQQVDAAELGEDAIYPIWRLR 488
>ref|NP_565473.1| putative mitochondrial inner membrane translocating protein;
protein id: At2g20510.1 [Arabidopsis thaliana]
gi|20198086|gb|AAD25651.2| putative mitochondrial inner
membrane translocating protein [Arabidopsis thaliana]
Length = 472
Score = 125 bits (314), Expect = 4e-28
Identities = 53/96 (55%), Positives = 72/96 (74%)
Frame = -2
Query: 585 RCKAEHNAYQSHGIFFDNKILHVSDVDVRETKMLESSPVIVVMFHTQPIHCVRDRHGEIT 406
RC AE AYQ+HG+ FDNK+LH+S+V V TKM+ SP+I+ F TQ I+CVRD +GEI
Sbjct: 366 RCTAERTAYQTHGVLFDNKLLHISEVSVSVTKMMGDSPIIIAKFQTQEIYCVRDENGEIQ 425
Query: 405 EGGKDTIHNIFYLWALPQVNQTDNAEDGIYLMWKLQ 298
EGG+DTIH +++ WA+ QV T+ ED IY +W+L+
Sbjct: 426 EGGQDTIHTVYHEWAMQQVETTELGEDAIYPIWRLR 461
>pir||B84590 hypothetical protein At2g20510 [imported] - Arabidopsis thaliana
Length = 533
Score = 125 bits (314), Expect = 4e-28
Identities = 53/96 (55%), Positives = 72/96 (74%)
Frame = -2
Query: 585 RCKAEHNAYQSHGIFFDNKILHVSDVDVRETKMLESSPVIVVMFHTQPIHCVRDRHGEIT 406
RC AE AYQ+HG+ FDNK+LH+S+V V TKM+ SP+I+ F TQ I+CVRD +GEI
Sbjct: 427 RCTAERTAYQTHGVLFDNKLLHISEVSVSVTKMMGDSPIIIAKFQTQEIYCVRDENGEIQ 486
Query: 405 EGGKDTIHNIFYLWALPQVNQTDNAEDGIYLMWKLQ 298
EGG+DTIH +++ WA+ QV T+ ED IY +W+L+
Sbjct: 487 EGGQDTIHTVYHEWAMQQVETTELGEDAIYPIWRLR 522
>dbj|BAC20728.1| mitochondrial inner membrane translocating protein-like [Oryza
sativa (japonica cultivar-group)]
Length = 413
Score = 97.8 bits (242), Expect = 9e-20
Identities = 48/92 (52%), Positives = 66/92 (71%), Gaps = 2/92 (2%)
Frame = -2
Query: 534 NKILHVSDVDVRETKMLESSPVIVVMFHTQPIHCVRDRHGEITEGGKDTIHNIFYLWALP 355
+KILH+SD DVRETKM+ S+P+I+V F TQ I+CVRDR G++TEGG+DTI +FY WA+
Sbjct: 323 SKILHISDADVRETKMMGSTPIIIVGFQTQQIYCVRDREGQVTEGGQDTIQTVFYAWAM- 381
Query: 354 QVNQTDNA--EDGIYLMWKLQRDAPAQGFKPL 265
Q+ +D E+ Y +W+L R+ G K L
Sbjct: 382 QLMDSDEVPEEESYYPVWRL-REIQQVGIKAL 412
>ref|NP_650786.2| CG11779-PA [Drosophila melanogaster] gi|7300484|gb|AAF55639.1|
CG11779-PA [Drosophila melanogaster]
Length = 459
Score = 60.1 bits (144), Expect = 2e-08
Identities = 21/64 (32%), Positives = 41/64 (63%)
Frame = -2
Query: 549 GIFFDNKILHVSDVDVRETKMLESSPVIVVMFHTQPIHCVRDRHGEITEGGKDTIHNIFY 370
G++ D+KIL + ++++ K++E PV+++ F Q I CVRD+ ++ EG + + + Y
Sbjct: 369 GVYLDSKILDIENIELAMGKVMEQGPVLIITFQAQQIMCVRDQKSQVVEGDPEKVMRVHY 428
Query: 369 LWAL 358
+W L
Sbjct: 429 VWVL 432
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,419,685
Number of Sequences: 1393205
Number of extensions: 10507948
Number of successful extensions: 21554
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 21033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21551
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
