Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011827A_C01 KMC011827A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB44014.1| putative clathrin-associated protein [Oryza sati... 99 3e-20
ref|NP_176277.1| clathrin adaptor medium chain protein MU1B, put... 99 4e-20
gb|AAF17661.1|AC009398_10 F20B24.16 [Arabidopsis thaliana] 90 2e-17
ref|NP_172543.1| putative clathrin-coat assembly protein; protei... 90 2e-17
pir||T23603 hypothetical protein K11D2.3 - Caenorhabditis elegans 89 3e-17
>dbj|BAB44014.1| putative clathrin-associated protein [Oryza sativa (japonica
cultivar-group)] gi|20804602|dbj|BAB92293.1| putative
clathrin-associated protein [Oryza sativa (japonica
cultivar-group)]
Length = 429
Score = 99.4 bits (246), Expect = 3e-20
Identities = 48/48 (100%), Positives = 48/48 (100%)
Frame = -1
Query: 563 IRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI 420
IRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI
Sbjct: 382 IRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI 429
>ref|NP_176277.1| clathrin adaptor medium chain protein MU1B, putative; protein id:
At1g60780.1, supported by cDNA: gi_20466371 [Arabidopsis
thaliana] gi|25320049|pir||C96633 probable
Serine/Threonine protein kinase F8A5.29 [imported] -
Arabidopsis thaliana gi|2462748|gb|AAB71967.1| putative
Clathrin Coat Assembly protein [Arabidopsis thaliana]
gi|20466372|gb|AAM20503.1| clathrin adaptor medium chain
protein MU1B, putative [Arabidopsis thaliana]
gi|25084014|gb|AAN72155.1| clathrin adaptor medium chain
protein MU1B, putative [Arabidopsis thaliana]
Length = 428
Score = 99.0 bits (245), Expect = 4e-20
Identities = 47/48 (97%), Positives = 48/48 (99%)
Frame = -1
Query: 563 IRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI 420
IRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRL+
Sbjct: 381 IRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLV 428
>gb|AAF17661.1|AC009398_10 F20B24.16 [Arabidopsis thaliana]
Length = 411
Score = 89.7 bits (221), Expect = 2e-17
Identities = 44/48 (91%), Positives = 45/48 (93%)
Frame = -1
Query: 563 IRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI 420
IRVKFEIP F VSGIQVRYLKIIEKSGYQA PWVRYITMAGEYELRL+
Sbjct: 364 IRVKFEIPKFIVSGIQVRYLKIIEKSGYQAHPWVRYITMAGEYELRLM 411
>ref|NP_172543.1| putative clathrin-coat assembly protein; protein id: At1g10730.1
[Arabidopsis thaliana] gi|25320047|pir||G86240
hypothetical protein [imported] - Arabidopsis thaliana
gi|4874275|gb|AAD31340.1|AC007354_13 Similar to
gb|L26291 clathrin-associated protein unc-101 from
Caenorhabditis elegans and is a member of the PF|00928
Adapter complexes medium subunit family. [Arabidopsis
thaliana]
Length = 428
Score = 89.7 bits (221), Expect = 2e-17
Identities = 44/48 (91%), Positives = 45/48 (93%)
Frame = -1
Query: 563 IRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI 420
IRVKFEIP F VSGIQVRYLKIIEKSGYQA PWVRYITMAGEYELRL+
Sbjct: 381 IRVKFEIPKFIVSGIQVRYLKIIEKSGYQAHPWVRYITMAGEYELRLM 428
>pir||T23603 hypothetical protein K11D2.3 - Caenorhabditis elegans
Length = 425
Score = 89.4 bits (220), Expect = 3e-17
Identities = 41/47 (87%), Positives = 44/47 (93%)
Frame = -1
Query: 563 IRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRL 423
I+VKFEIPYFT SGIQVRYLKIIEKSGYQALPWVRYIT GEYE+R+
Sbjct: 378 IKVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGEYEMRM 424
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,296,332
Number of Sequences: 1393205
Number of extensions: 9699726
Number of successful extensions: 23986
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 23278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23941
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
