Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011803A_C01 KMC011803A_c01
(624 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD32302.1| ribonucleotide reductase small subunit [Glycine max] 138 4e-47
ref|NP_189000.1| ribonucleoside-diphosphate reductase small chai... 137 2e-46
pir||S68538 ribonucleoside-diphosphate reductase (EC 1.17.4.1) s... 130 3e-44
gb|AAC23560.1| ribonucleotide reductase M2 subunit [Leishmania m... 124 3e-42
gb|AAF91416.1|AF275635_1 ribonucleotide reductase R2 subunit [Cr... 122 3e-42
>gb|AAD32302.1| ribonucleotide reductase small subunit [Glycine max]
Length = 339
Score = 138 bits (348), Expect(2) = 4e-47
Identities = 66/84 (78%), Positives = 71/84 (83%)
Frame = -2
Query: 623 FCAIFWLKNRGLMPGLTFSXELISRDEGLHCDFACLLYSLLEKKLSEERVKGIVRDAVEI 444
FCAIFWLK RGLMPGLTFS ELISRDEGLHCDFACLLYSLL K L ++V +V +AVEI
Sbjct: 186 FCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKPLISDQVHKLVHEAVEI 245
Query: 443 EREFVCDALPCALLGMNGDQMSQY 372
E EFVCDALPCAL+GMN MSQY
Sbjct: 246 ETEFVCDALPCALIGMNSVLMSQY 269
Score = 71.6 bits (174), Expect(2) = 4e-47
Identities = 38/73 (52%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Frame = -1
Query: 378 SVYLSLLRITWFEKLGCGKVYNVVNPFPWMELISLKGKTNFFEKRVGEYQIASVMNGDGD 199
S Y+ + LG + YNV NPF WME ISL+GK NFFE+RVG+YQ ASVM+ D
Sbjct: 267 SQYIKFVADRLLVALGYQRKYNVENPFDWMEFISLQGKANFFERRVGDYQKASVMSSLQD 326
Query: 198 AR---VFNMDEEF 169
A VF +DE+F
Sbjct: 327 AGKNFVFKLDEDF 339
>ref|NP_189000.1| ribonucleoside-diphosphate reductase small chain; protein id:
At3g23580.1, supported by cDNA: gi_13937231 [Arabidopsis
thaliana] gi|27735240|sp|P50651|RIR2_ARATH
Ribonucleoside-diphosphate reductase small chain
(Ribonucleotide reductase) (R2 subunit)
gi|9294514|dbj|BAB02776.1| ribonucleotide reductase
[Arabidopsis thaliana]
gi|13937232|gb|AAK50108.1|AF372971_1 AT3g23580/MDB19_7
[Arabidopsis thaliana] gi|23505945|gb|AAN28832.1|
At3g23580/MDB19_7 [Arabidopsis thaliana]
Length = 341
Score = 137 bits (346), Expect(2) = 2e-46
Identities = 66/84 (78%), Positives = 72/84 (85%)
Frame = -2
Query: 623 FCAIFWLKNRGLMPGLTFSXELISRDEGLHCDFACLLYSLLEKKLSEERVKGIVRDAVEI 444
FCAIFWLK RGLMPGLTFS ELISRDEGLHCDFACLLYSLL+K+L E+V IV +AVEI
Sbjct: 188 FCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQLPLEKVYQIVHEAVEI 247
Query: 443 EREFVCDALPCALLGMNGDQMSQY 372
E EFVC ALPC L+GMN + MSQY
Sbjct: 248 ETEFVCKALPCDLIGMNSNLMSQY 271
Score = 70.5 bits (171), Expect(2) = 2e-46
Identities = 38/74 (51%), Positives = 46/74 (61%), Gaps = 4/74 (5%)
Frame = -1
Query: 378 SVYLSLLRITWFEKLGCGKVYNVVNPFPWMELISLKGKTNFFEKRVGEYQIASVM----N 211
S Y+ + LGC + Y NPF WME ISL+GKTNFFEKRVGEYQ ASVM N
Sbjct: 269 SQYIQFVADRLLVTLGCERTYKAENPFDWMEFISLQGKTNFFEKRVGEYQKASVMSNLQN 328
Query: 210 GDGDARVFNMDEEF 169
G+ + F +E+F
Sbjct: 329 GNQNYE-FTTEEDF 341
>pir||S68538 ribonucleoside-diphosphate reductase (EC 1.17.4.1) small chain -
Arabidopsis thaliana gi|840719|emb|CAA54549.1|
ribonucleotide reductase R2 [Arabidopsis thaliana]
Length = 340
Score = 130 bits (326), Expect(2) = 3e-44
Identities = 63/84 (75%), Positives = 69/84 (82%)
Frame = -2
Query: 623 FCAIFWLKNRGLMPGLTFSXELISRDEGLHCDFACLLYSLLEKKLSEERVKGIVRDAVEI 444
FCAIFWLK RGLMPGLTFS ELISRDEGLHCDFACLL SLL+ + E+V IV +AVEI
Sbjct: 187 FCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLISLLQLHVPLEKVYQIVHEAVEI 246
Query: 443 EREFVCDALPCALLGMNGDQMSQY 372
E EFVC ALPC L+GMN + MSQY
Sbjct: 247 ETEFVCKALPCDLIGMNSNLMSQY 270
Score = 70.5 bits (171), Expect(2) = 3e-44
Identities = 38/74 (51%), Positives = 46/74 (61%), Gaps = 4/74 (5%)
Frame = -1
Query: 378 SVYLSLLRITWFEKLGCGKVYNVVNPFPWMELISLKGKTNFFEKRVGEYQIASVM----N 211
S Y+ + LGC + Y NPF WME ISL+GKTNFFEKRVGEYQ ASVM N
Sbjct: 268 SQYIQFVADRLLVTLGCERTYKAENPFDWMEFISLQGKTNFFEKRVGEYQKASVMSNLQN 327
Query: 210 GDGDARVFNMDEEF 169
G+ + F +E+F
Sbjct: 328 GNQNYE-FTTEEDF 340
>gb|AAC23560.1| ribonucleotide reductase M2 subunit [Leishmania mexicana
amazonensis]
Length = 354
Score = 124 bits (312), Expect(2) = 3e-42
Identities = 61/85 (71%), Positives = 69/85 (80%), Gaps = 1/85 (1%)
Frame = -2
Query: 623 FCAIFWLKNRGLMPGLTFSXELISRDEGLHCDFACLLY-SLLEKKLSEERVKGIVRDAVE 447
FCA+FWLK RGLMPGLTFS ELISRDEGLH DFACLLY S ++ KL ERV I+ DAV
Sbjct: 203 FCALFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYNSHIKHKLPRERVLEIIVDAVN 262
Query: 446 IEREFVCDALPCALLGMNGDQMSQY 372
IEREF+CDALP L+GMN + M+QY
Sbjct: 263 IEREFICDALPVRLIGMNAELMAQY 287
Score = 69.3 bits (168), Expect(2) = 3e-42
Identities = 33/68 (48%), Positives = 46/68 (67%)
Frame = -1
Query: 372 YLSLLRITWFEKLGCGKVYNVVNPFPWMELISLKGKTNFFEKRVGEYQIASVMNGDGDAR 193
Y+ + LG K YN PF +ME+ISL+GKTNFFEK+VGEYQ A VM+ +G ++
Sbjct: 287 YIEFVADRLLVSLGEEKHYNSTQPFDFMEMISLQGKTNFFEKKVGEYQKAGVMSTEGTSK 346
Query: 192 VFNMDEEF 169
F++ E+F
Sbjct: 347 KFSLSEDF 354
>gb|AAF91416.1|AF275635_1 ribonucleotide reductase R2 subunit [Cryptosporidium parvum]
Length = 352
Score = 122 bits (306), Expect(2) = 3e-42
Identities = 57/84 (67%), Positives = 67/84 (78%)
Frame = -2
Query: 623 FCAIFWLKNRGLMPGLTFSXELISRDEGLHCDFACLLYSLLEKKLSEERVKGIVRDAVEI 444
FCAIFWLK RGLMPGLTFS ELISRDEGLH DFACL+Y L+ KL RV+ I+ +AVE+
Sbjct: 203 FCAIFWLKKRGLMPGLTFSNELISRDEGLHADFACLIYKALKFKLPAPRVQQIISEAVEV 262
Query: 443 EREFVCDALPCALLGMNGDQMSQY 372
ER F+CD+LP L+GMN M+QY
Sbjct: 263 ERNFLCDSLPVDLIGMNSRLMAQY 286
Score = 71.6 bits (174), Expect(2) = 3e-42
Identities = 33/52 (63%), Positives = 42/52 (80%)
Frame = -1
Query: 324 KVYNVVNPFPWMELISLKGKTNFFEKRVGEYQIASVMNGDGDARVFNMDEEF 169
K+YNV NPF WM+LISL+GKTNFFEKRVGEYQ+A VM D + F+++ +F
Sbjct: 302 KIYNVSNPFDWMDLISLQGKTNFFEKRVGEYQMAGVMVNQDDQK-FDLNADF 352
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,679,431
Number of Sequences: 1393205
Number of extensions: 11280365
Number of successful extensions: 56910
Number of sequences better than 10.0: 351
Number of HSP's better than 10.0 without gapping: 50976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55879
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
