Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011783A_C01 KMC011783A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK68755.2| Unknown protein [Arabidopsis thaliana] gi|2014870... 74 1e-12
ref|NP_566661.1| RNA helicase, putative; protein id: At3g20420.1... 74 1e-12
ref|NP_199328.1| putative protein; protein id: At5g45150.1 [Arab... 62 3e-09
ref|NP_197532.1| CAF-like protein; protein id: At5g20320.1 [Arab... 49 3e-05
ref|NP_171612.1| DEAD/DEAH box helicase carpel factory (CAF); pr... 44 8e-04
>gb|AAK68755.2| Unknown protein [Arabidopsis thaliana] gi|20148705|gb|AAM10243.1|
unknown protein [Arabidopsis thaliana]
Length = 391
Score = 73.9 bits (180), Expect = 1e-12
Identities = 33/78 (42%), Positives = 54/78 (68%)
Frame = -2
Query: 431 AKHRLHELCVMKKWSKPVYSIRKDEGPPHEKIYLCSVQIPTTPHGPLQMFGEEKSRLKDA 252
AK +L+E+C+ KKW KP+YS+ +D K ++CS +I T L M G+E+S++K A
Sbjct: 314 AKTKLNEICLKKKWPKPIYSVEEDRSSVQGKRFVCSAKIKITEEKTLYMKGDEQSKIKKA 373
Query: 251 ENSAASFMIRALQERNFI 198
E+S+A MIRAL++ +++
Sbjct: 374 ESSSAYHMIRALRKSHYL 391
>ref|NP_566661.1| RNA helicase, putative; protein id: At3g20420.1, supported by cDNA:
gi_17511263, supported by cDNA: gi_20148704 [Arabidopsis
thaliana] gi|9294562|dbj|BAB02825.1| contains similarity
to CAF protein~gene_id:MQC12.21 [Arabidopsis thaliana]
Length = 391
Score = 73.9 bits (180), Expect = 1e-12
Identities = 33/78 (42%), Positives = 54/78 (68%)
Frame = -2
Query: 431 AKHRLHELCVMKKWSKPVYSIRKDEGPPHEKIYLCSVQIPTTPHGPLQMFGEEKSRLKDA 252
AK +L+E+C+ KKW KP+YS+ +D K ++CS +I T L M G+E+S++K A
Sbjct: 314 AKTKLNEICLKKKWPKPIYSVEEDRSSVQGKRFVCSAKIKITEEKTLYMKGDEQSKIKKA 373
Query: 251 ENSAASFMIRALQERNFI 198
E+S+A MIRAL++ +++
Sbjct: 374 ESSSAYHMIRALRKSHYL 391
>ref|NP_199328.1| putative protein; protein id: At5g45150.1 [Arabidopsis thaliana]
gi|9759600|dbj|BAB11388.1|
emb|CAB88120.1~gene_id:K18C1.3~similar to unknown
protein [Arabidopsis thaliana]
Length = 957
Score = 62.4 bits (150), Expect = 3e-09
Identities = 30/70 (42%), Positives = 46/70 (64%), Gaps = 1/70 (1%)
Frame = -2
Query: 419 LHELCVMKKWSKPVYSIRKDEGPPHEKIYLCSVQIP-TTPHGPLQMFGEEKSRLKDAENS 243
L E+C KW +P++S+++++GP +E ++CSV+I G M G+ KS+ K AENS
Sbjct: 312 LIEICTKNKWPRPIFSVQEEKGPKNEPKFVCSVKIEIPNIEGTFHMKGDIKSKKKQAENS 371
Query: 242 AASFMIRALQ 213
A MIRAL+
Sbjct: 372 LAYHMIRALE 381
Score = 58.2 bits (139), Expect = 5e-08
Identities = 28/73 (38%), Positives = 44/73 (59%), Gaps = 1/73 (1%)
Frame = -2
Query: 428 KHRLHELCVMKKWSKPVYSIRKDEGPPHEKIYLCSVQIP-TTPHGPLQMFGEEKSRLKDA 252
K +L E+C KW P++S+ ++ G +E+ +CSV+I G + G+ K K+A
Sbjct: 839 KGKLFEICAKNKWPNPIFSVEEERGQQNEQKIVCSVKIEIPNIEGTFHIKGDAKPTKKEA 898
Query: 251 ENSAASFMIRALQ 213
ENS+A MIRAL+
Sbjct: 899 ENSSADHMIRALE 911
>ref|NP_197532.1| CAF-like protein; protein id: At5g20320.1 [Arabidopsis thaliana]
Length = 1589
Score = 48.9 bits (115), Expect = 3e-05
Identities = 26/80 (32%), Positives = 40/80 (49%), Gaps = 2/80 (2%)
Frame = -2
Query: 431 AKHRLHELCVMKKWSKPVYSIRKDEGPPHEK--IYLCSVQIPTTPHGPLQMFGEEKSRLK 258
AK LHE CV W P + ++EGP H K +Y +++ P+ L+ +GE ++ K
Sbjct: 1509 AKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVEDAPNMTLECYGEARATKK 1568
Query: 257 DAENSAASFMIRALQERNFI 198
A AA I L+ F+
Sbjct: 1569 GAAEHAAQAAIWCLKHSGFL 1588
>ref|NP_171612.1| DEAD/DEAH box helicase carpel factory (CAF); protein id: At1g01040.1,
supported by cDNA: gi_11559644, supported by cDNA:
gi_6102609 [Arabidopsis thaliana]
gi|11559645|gb|AAG38019.1|AF292940_1 short integuments 1
[Arabidopsis thaliana]
gi|11559647|gb|AAG38020.1|AF292941_1 short integuments 1
[Arabidopsis thaliana]
Length = 1909
Score = 44.3 bits (103), Expect = 8e-04
Identities = 22/74 (29%), Positives = 39/74 (51%), Gaps = 1/74 (1%)
Frame = -2
Query: 428 KHRLHELCVMKKWSKPVYSIRKDEGPPHEKIYLCSVQIPTTPHG-PLQMFGEEKSRLKDA 252
+ L+++C+ K W P Y K+ GP H K + V++ T+ G + GE +K A
Sbjct: 1833 RQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKA 1892
Query: 251 ENSAASFMIRALQE 210
++SAA ++ L +
Sbjct: 1893 KDSAAVLLLELLNK 1906
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,340,036
Number of Sequences: 1393205
Number of extensions: 9666288
Number of successful extensions: 25319
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 24745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25313
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
