Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011769A_C01 KMC011769A_c01
(847 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194182.1| CER2; protein id: At4g24510.1, supported by cDN... 76 1e-13
ref|NP_566741.1| expressed protein; protein id: At3g23840.1, sup... 60 3e-09
gb|AAM65391.1| fatty acid elongase-like protein (cer2-like) [Ara... 60 3e-09
ref|NP_193120.1| fatty acid elongase - like protein (cer2-like);... 56 2e-08
pir||S60660 hypothetical protein - maize gi|949980|emb|CAA61258.... 55 2e-06
>ref|NP_194182.1| CER2; protein id: At4g24510.1, supported by cDNA: 33382.
[Arabidopsis thaliana] gi|7459577|pir||T05583 CER2
protein - Arabidopsis thaliana
gi|1213594|emb|CAA63618.1| responsible for fatty acid
elongation from C28 to C30 [Arabidopsis thaliana]
gi|1655786|gb|AAB17946.1| CER2 gene product
gi|4220539|emb|CAA23012.1| CER2 [Arabidopsis thaliana]
gi|7269301|emb|CAB79361.1| CER2 [Arabidopsis thaliana]
gi|21592867|gb|AAM64817.1| CER2 [Arabidopsis thaliana]
Length = 421
Score = 75.9 bits (185), Expect(2) = 1e-13
Identities = 35/76 (46%), Positives = 54/76 (71%)
Frame = -1
Query: 841 LASKHADQGLDERDQIEEAMAKDQGVVDFCFYGAHSTFLDLEDVNVYDLELNGEKPKYVY 662
LA+ A + +E I+ + +D+G DF YGA+ TF++L+++++Y+LE+NG KP +V
Sbjct: 317 LAALIAGEKREENGAIKRMIEQDKGSSDFFTYGANLTFVNLDEIDMYELEINGGKPDFVN 376
Query: 661 YTPHGVGDEGAVLVLP 614
YT HGVGD+G VLV P
Sbjct: 377 YTIHGVGDKGVVLVFP 392
Score = 23.1 bits (48), Expect(2) = 1e-13
Identities = 7/19 (36%), Positives = 15/19 (78%)
Frame = -2
Query: 576 KFVIMILPEDEMVKLKSEL 520
+ V +++PE+++ KLK E+
Sbjct: 398 RIVSVVMPEEDLAKLKEEV 416
>ref|NP_566741.1| expressed protein; protein id: At3g23840.1, supported by cDNA:
38849. [Arabidopsis thaliana] gi|9294653|dbj|BAB03002.1|
fatty acid elongase-like protein [Arabidopsis thaliana]
Length = 420
Score = 60.1 bits (144), Expect(2) = 3e-09
Identities = 30/73 (41%), Positives = 46/73 (62%)
Frame = -1
Query: 832 KHADQGLDERDQIEEAMAKDQGVVDFCFYGAHSTFLDLEDVNVYDLELNGEKPKYVYYTP 653
K + DER I+E + V DF YGA+ TF+D+ +V+ Y+ ++ G+ P+ VY
Sbjct: 316 KSIGEAKDERVVIDEIV---DDVSDFIVYGANLTFVDMSEVDFYEAKVMGKSPESVYCNV 372
Query: 652 HGVGDEGAVLVLP 614
G+GD+GAV+VLP
Sbjct: 373 QGIGDDGAVVVLP 385
Score = 23.9 bits (50), Expect(2) = 3e-09
Identities = 11/27 (40%), Positives = 18/27 (65%)
Frame = -2
Query: 582 EGKFVIMILPEDEMVKLKSELKVNGIM 502
E + V + LP DE+ K+K E+K G++
Sbjct: 390 EERVVTVTLPVDEIEKVKWEMKKCGLI 416
>gb|AAM65391.1| fatty acid elongase-like protein (cer2-like) [Arabidopsis thaliana]
Length = 420
Score = 60.1 bits (144), Expect(2) = 3e-09
Identities = 30/73 (41%), Positives = 46/73 (62%)
Frame = -1
Query: 832 KHADQGLDERDQIEEAMAKDQGVVDFCFYGAHSTFLDLEDVNVYDLELNGEKPKYVYYTP 653
K + DER I+E + V DF YGA+ TF+D+ +V+ Y+ ++ G+ P+ VY
Sbjct: 316 KSIGEAKDERVVIDEIV---DDVSDFIVYGANLTFVDMSEVDFYEAKVMGKSPESVYCNV 372
Query: 652 HGVGDEGAVLVLP 614
G+GD+GAV+VLP
Sbjct: 373 QGIGDDGAVVVLP 385
Score = 23.9 bits (50), Expect(2) = 3e-09
Identities = 11/27 (40%), Positives = 18/27 (65%)
Frame = -2
Query: 582 EGKFVIMILPEDEMVKLKSELKVNGIM 502
E + V + LP DE+ K+K E+K G++
Sbjct: 390 EERVVTVTLPVDEIEKVKWEMKKCGLI 416
>ref|NP_193120.1| fatty acid elongase - like protein (cer2-like); protein id:
At4g13840.1, supported by cDNA: gi_17933316 [Arabidopsis
thaliana] gi|7459578|pir||T05253 CER2 protein homolog
F18A5.230 - Arabidopsis thaliana
gi|4455313|emb|CAB36848.1| fatty acid elongase-like
protein (cer2-like) [Arabidopsis thaliana]
gi|7268088|emb|CAB78426.1| fatty acid elongase-like
protein (cer2-like) [Arabidopsis thaliana]
gi|17933317|gb|AAL48240.1|AF446369_1 AT4g13840/F18A5_230
[Arabidopsis thaliana] gi|23308387|gb|AAN18163.1|
At4g13840/F18A5_230 [Arabidopsis thaliana]
Length = 428
Score = 55.8 bits (133), Expect(2) = 2e-08
Identities = 29/71 (40%), Positives = 41/71 (56%)
Frame = -1
Query: 832 KHADQGLDERDQIEEAMAKDQGVVDFCFYGAHSTFLDLEDVNVYDLELNGEKPKYVYYTP 653
K + DER IEE G +DF YGA TFLDL ++Y+ ++ G+ P+ VY
Sbjct: 323 KAMGEAKDERCGIEEIGESCDGNLDFVVYGAKLTFLDLTGEDLYEAKVMGKSPESVYCNV 382
Query: 652 HGVGDEGAVLV 620
G+G+EG V+V
Sbjct: 383 EGIGEEGLVVV 393
Score = 25.0 bits (53), Expect(2) = 2e-08
Identities = 11/27 (40%), Positives = 18/27 (65%)
Frame = -2
Query: 582 EGKFVIMILPEDEMVKLKSELKVNGIM 502
E + V + LPE+EM ++K E K G++
Sbjct: 400 EERVVTVTLPEEEMERVKLEFKKFGLI 426
>pir||S60660 hypothetical protein - maize gi|949980|emb|CAA61258.1| orf [Zea
mays]
Length = 426
Score = 54.7 bits (130), Expect = 2e-06
Identities = 29/58 (50%), Positives = 40/58 (68%)
Frame = -1
Query: 787 AMAKDQGVVDFCFYGAHSTFLDLEDVNVYDLELNGEKPKYVYYTPHGVGDEGAVLVLP 614
A+A QG V + GA+ T +D+E V++Y LE+ G++P +V Y GVGDEGAVLV P
Sbjct: 338 AVAAFQGDV-LVYGGANLTLVDMEQVDLYGLEIKGQRPVHVEYGMDGVGDEGAVLVQP 394
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 746,878,922
Number of Sequences: 1393205
Number of extensions: 17064242
Number of successful extensions: 64022
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 58028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63947
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44316199683
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
