Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011767A_C01 KMC011767A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB33036.1| CPRD49 [Vigna unguiculata] 110 2e-23
ref|NP_566387.1| expressed protein; protein id: At3g11210.1, sup... 107 1e-22
gb|AAM63310.1| CPRD49 [Arabidopsis thaliana] 107 1e-22
ref|NP_565883.1| expressed protein; protein id: At2g38180.1, sup... 89 3e-17
gb|AAL31218.1| At2g38180/F16M14.11 [Arabidopsis thaliana] 89 3e-17
>dbj|BAB33036.1| CPRD49 [Vigna unguiculata]
Length = 255
Score = 110 bits (274), Expect = 2e-23
Identities = 49/62 (79%), Positives = 55/62 (88%)
Frame = -3
Query: 556 LWSAIQKREDWLDVCFTDGVHLSAEGSKIVAKEILKVLKEAEWEPSLHWKSMPFEFGEDS 377
LWSAIQ REDWLDV FTDGVHLSAEGSK+V KEIL+VL+EA+W+ SLHW SMP E+ EDS
Sbjct: 168 LWSAIQAREDWLDVSFTDGVHLSAEGSKVVVKEILRVLREADWKTSLHWMSMPTEYAEDS 227
Query: 376 PY 371
PY
Sbjct: 228 PY 229
>ref|NP_566387.1| expressed protein; protein id: At3g11210.1, supported by cDNA:
21357. [Arabidopsis thaliana]
gi|6016678|gb|AAF01505.1|AC009991_1 unknown protein
[Arabidopsis thaliana]
gi|12321863|gb|AAG50959.1|AC073395_1 unknown protein;
50065-48267 [Arabidopsis thaliana]
Length = 256
Score = 107 bits (266), Expect = 1e-22
Identities = 47/63 (74%), Positives = 54/63 (85%)
Frame = -3
Query: 556 LWSAIQKREDWLDVCFTDGVHLSAEGSKIVAKEILKVLKEAEWEPSLHWKSMPFEFGEDS 377
L+S QK +DW VCFTDG+HLSA+GSKIVA EIL+V+KEAEW PSLHWKSMP EF +DS
Sbjct: 170 LFSTFQKADDWKTVCFTDGIHLSAQGSKIVAGEILRVVKEAEWHPSLHWKSMPTEFADDS 229
Query: 376 PYD 368
PYD
Sbjct: 230 PYD 232
>gb|AAM63310.1| CPRD49 [Arabidopsis thaliana]
Length = 256
Score = 107 bits (266), Expect = 1e-22
Identities = 47/63 (74%), Positives = 54/63 (85%)
Frame = -3
Query: 556 LWSAIQKREDWLDVCFTDGVHLSAEGSKIVAKEILKVLKEAEWEPSLHWKSMPFEFGEDS 377
L+S QK +DW VCFTDG+HLSA+GSKIVA EIL+V+KEAEW PSLHWKSMP EF +DS
Sbjct: 170 LFSTFQKADDWKTVCFTDGIHLSAQGSKIVAGEILRVVKEAEWHPSLHWKSMPTEFADDS 229
Query: 376 PYD 368
PYD
Sbjct: 230 PYD 232
>ref|NP_565883.1| expressed protein; protein id: At2g38180.1, supported by cDNA:
gi_16974630 [Arabidopsis thaliana]
gi|7485583|pir||T01250 hypothetical protein At2g38180
[imported] - Arabidopsis thaliana
gi|3335366|gb|AAC27167.1| expressed protein [Arabidopsis
thaliana]
Length = 312
Score = 89.4 bits (220), Expect = 3e-17
Identities = 38/67 (56%), Positives = 54/67 (79%)
Frame = -3
Query: 556 LWSAIQKREDWLDVCFTDGVHLSAEGSKIVAKEILKVLKEAEWEPSLHWKSMPFEFGEDS 377
+W+AIQ+++DWL+ CFTDG+H +A+ S+IV KEILKVL+ A+W+PSL+WKS+P EF
Sbjct: 168 IWTAIQQQDDWLNSCFTDGIHFTAKASEIVVKEILKVLRGADWKPSLYWKSLPVEF---- 223
Query: 376 PYDAHWP 356
P+D P
Sbjct: 224 PFDFDAP 230
>gb|AAL31218.1| At2g38180/F16M14.11 [Arabidopsis thaliana]
Length = 312
Score = 89.4 bits (220), Expect = 3e-17
Identities = 38/67 (56%), Positives = 54/67 (79%)
Frame = -3
Query: 556 LWSAIQKREDWLDVCFTDGVHLSAEGSKIVAKEILKVLKEAEWEPSLHWKSMPFEFGEDS 377
+W+AIQ+++DWL+ CFTDG+H +A+ S+IV KEILKVL+ A+W+PSL+WKS+P EF
Sbjct: 168 IWTAIQQQDDWLNSCFTDGIHFTAKASEIVVKEILKVLRGADWKPSLYWKSLPVEF---- 223
Query: 376 PYDAHWP 356
P+D P
Sbjct: 224 PFDFDAP 230
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,308,509
Number of Sequences: 1393205
Number of extensions: 10384764
Number of successful extensions: 17591
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17589
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
