Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011765A_C01 KMC011765A_c01
(410 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA28293.1| hypothetical protein [Neurospora crassa] 32 1.4
gb|ZP_00041096.1| hypothetical protein [Xylella fastidiosa Ann-1] 31 3.2
ref|NP_061244.1| polyhomeotic-like 2; polyhomeotic 2 protein; ea... 30 7.1
ref|NP_077473.1| uracil DNA glycosylase [Cercopithecine herpesvi... 30 7.1
gb|EAA31589.1| hypothetical protein [Neurospora crassa] gi|28950... 30 7.1
>gb|EAA28293.1| hypothetical protein [Neurospora crassa]
Length = 581
Score = 32.3 bits (72), Expect = 1.4
Identities = 23/71 (32%), Positives = 32/71 (44%), Gaps = 2/71 (2%)
Frame = -2
Query: 388 PGSPNMKDMGPGQPASTTNA--AITHAKSRTLATPTHKHL*SNKLICGFNVIHM*PERTE 215
P S +PA+TT A A+T LA+ + S+ + G N PE +
Sbjct: 426 PSSDFSSAFNLSKPAATTPAPAAVTSTTPNPLASIATSNAWSDAGVWGSNEWASAPEPPK 485
Query: 214 NAAPSPPNPSP 182
AAP PP P+P
Sbjct: 486 PAAPEPPKPAP 496
>gb|ZP_00041096.1| hypothetical protein [Xylella fastidiosa Ann-1]
Length = 836
Score = 31.2 bits (69), Expect = 3.2
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 246 LKPQISLLLQRCLWVGVASVLDLACVIAALVVDAGCPGPMSFMLG 380
+KP+ +LQRC WV V SV+ A + L + A P ++ +LG
Sbjct: 15 MKPEQRHMLQRC-WVDVLSVIRHAACLRYLALPALLPSAVALLLG 58
>ref|NP_061244.1| polyhomeotic-like 2; polyhomeotic 2 protein; early development
regulator 2 (homolog of polyhomeotic 2); DNA segment,
Chr 4, ERATO Doi 810, expressed [Mus musculus]
gi|4098993|gb|AAD00519.1| polyhomeotic 2 [Mus musculus]
Length = 850
Score = 30.0 bits (66), Expect = 7.1
Identities = 20/68 (29%), Positives = 26/68 (37%)
Frame = -2
Query: 385 GSPNMKDMGPGQPASTTNAAITHAKSRTLATPTHKHL*SNKLICGFNVIHM*PERTENAA 206
G N G P A TH L P + HL S++L+ H P+
Sbjct: 297 GDGNCNMEGRPGPGRAVPAVATHP----LIAPAYAHLQSHQLLPQPPAKHPQPQFVAQQQ 352
Query: 205 PSPPNPSP 182
P PP P+P
Sbjct: 353 PQPPRPAP 360
>ref|NP_077473.1| uracil DNA glycosylase [Cercopithecine herpesvirus 7]
gi|5305635|gb|AAD41748.1|AF108378_2 uracil DNA
glycosylase [Cercopithecine herpesvirus 9]
gi|11036605|gb|AAG27234.1|AF275348_55 uracil DNA
glycosylase [Cercopithecine herpesvirus 7]
Length = 300
Score = 30.0 bits (66), Expect = 7.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 216 RTQHPHLQIPLHDCLDLW 163
R +PHL +P H CLD W
Sbjct: 177 RESYPHLPLPTHGCLDNW 194
>gb|EAA31589.1| hypothetical protein [Neurospora crassa] gi|28950088|emb|CAD70851.1|
related to leucine permease transcriptional regulator
SAC3 [Neurospora crassa]
Length = 1642
Score = 30.0 bits (66), Expect = 7.1
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -2
Query: 388 PGSPNMKDMGPGQPASTTNAAITHAKSRTLATPTHKHL*SNKLICGF--NVIHM*PERTE 215
P +PN K + P+ST A ++ T A PT L + +V P+ +
Sbjct: 902 PTAPNSKPL----PSSTATAGTEQQQASTPAVPTQTQLPGTPSMISTTPSVFSAPPKSVD 957
Query: 214 NAAPSPPNPSP 182
+ AP+PP P
Sbjct: 958 STAPTPPATQP 968
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 377,265,709
Number of Sequences: 1393205
Number of extensions: 7550741
Number of successful extensions: 17728
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17717
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 7023606888
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
