Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011755A_C01 KMC011755A_c01
(647 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680751.1| expressed protein; protein id: At4g30480.2, sup... 148 5e-35
gb|AAM61607.1| unknown [Arabidopsis thaliana] 146 2e-34
ref|NP_194777.2| expressed protein; protein id: At4g30480.1, sup... 145 3e-34
gb|AAL59042.1|AC087182_25 putative tetratricopeptide repeat prot... 134 1e-30
ref|NP_598556.1| RIKEN cDNA 4833412C19 [Mus musculus] gi|1630738... 82 8e-15
>ref|NP_680751.1| expressed protein; protein id: At4g30480.2, supported by cDNA:
12573. [Arabidopsis thaliana] gi|25407646|pir||E85356
hypothetical protein AT4g30480 [imported] - Arabidopsis
thaliana gi|7269949|emb|CAB79766.1| putative protein
[Arabidopsis thaliana]
Length = 277
Score = 148 bits (374), Expect = 5e-35
Identities = 81/178 (45%), Positives = 111/178 (61%), Gaps = 2/178 (1%)
Frame = +2
Query: 119 GFETASDTDLASDA--DDIRLEDHKHAEQPQQHHQEEEDQQQKQVEQEQEQERGDPPSII 292
GFETAS+ +++ + +D D +++ QH +++E+Q + E E
Sbjct: 42 GFETASEREISDEEGEEDGTKNDAVTSQEEPQHSEKKEEQIELMSEGE------------ 89
Query: 293 SSDVASINDEESNQKAWVEANEAKTEGNKLCLEGKYEEAWVQYELALQVAPDMPSSVEIR 472
A ++D + +KA EANEAK EGNKL + G YEEA +Y AL++ ++P S+E+R
Sbjct: 90 ----AIVDDGSNKEKALAEANEAKAEGNKLFVNGLYEEALSKYAFALELVQELPESIELR 145
Query: 473 SIFHSKRAVCLLKLGKYENTSRECAKALELNPTYVKALVRRGEAHEKLEHNEEGLADL 646
SI + R VC LKLGK E T +EC KALELNPTY KALVRR EAHEKLEH E+ + DL
Sbjct: 146 SICYLNRGVCFLKLGKCEETIKECTKALELNPTYNKALVRRAEAHEKLEHFEDAVTDL 203
>gb|AAM61607.1| unknown [Arabidopsis thaliana]
Length = 277
Score = 146 bits (369), Expect = 2e-34
Identities = 80/178 (44%), Positives = 110/178 (60%), Gaps = 2/178 (1%)
Frame = +2
Query: 119 GFETASDTDLASDA--DDIRLEDHKHAEQPQQHHQEEEDQQQKQVEQEQEQERGDPPSII 292
GFETAS+ +++ + +D D +++ QH +++E+Q + E E
Sbjct: 42 GFETASEREISDEEGEEDGTKNDAVTSQEEPQHSEKKEEQIELMSEGE------------ 89
Query: 293 SSDVASINDEESNQKAWVEANEAKTEGNKLCLEGKYEEAWVQYELALQVAPDMPSSVEIR 472
A ++D + +KA EANEAK EGNKL + G YEEA +Y AL++ ++P S+E+R
Sbjct: 90 ----AIVDDGSNKEKALAEANEAKAEGNKLFVNGLYEEALSKYAFALELVQELPESIELR 145
Query: 473 SIFHSKRAVCLLKLGKYENTSRECAKALELNPTYVKALVRRGEAHEKLEHNEEGLADL 646
SI + R VC LKLGK E T +EC KALELNP Y KALVRR EAHEKLEH E+ + DL
Sbjct: 146 SICYLNRGVCFLKLGKCEETIKECTKALELNPAYNKALVRRAEAHEKLEHFEDAVTDL 203
>ref|NP_194777.2| expressed protein; protein id: At4g30480.1, supported by cDNA:
gi_14423435 [Arabidopsis thaliana]
gi|14423436|gb|AAK62400.1|AF386955_1 Unknown protein
[Arabidopsis thaliana]
Length = 208
Score = 145 bits (367), Expect = 3e-34
Identities = 80/178 (44%), Positives = 110/178 (60%), Gaps = 2/178 (1%)
Frame = +2
Query: 119 GFETASDTDLASDA--DDIRLEDHKHAEQPQQHHQEEEDQQQKQVEQEQEQERGDPPSII 292
GFETAS+ +++ + +D D +++ QH +++E+Q + E E
Sbjct: 42 GFETASEREISDEEGEEDGTKNDAVTSQEEPQHSEKKEEQIELMSEGE------------ 89
Query: 293 SSDVASINDEESNQKAWVEANEAKTEGNKLCLEGKYEEAWVQYELALQVAPDMPSSVEIR 472
A ++D + +KA EANEAK EGNKL + G YEEA +Y AL++ ++P S+E+R
Sbjct: 90 ----AIVDDGSNKEKALAEANEAKAEGNKLFVNGLYEEALSKYAFALELVQELPESIELR 145
Query: 473 SIFHSKRAVCLLKLGKYENTSRECAKALELNPTYVKALVRRGEAHEKLEHNEEGLADL 646
SI + R VC LKLGK E T +EC KALELNPTY KALVRR EAHEKLEH E+ + L
Sbjct: 146 SICYLNRGVCFLKLGKCEETIKECTKALELNPTYNKALVRRAEAHEKLEHFEDAVTGL 203
>gb|AAL59042.1|AC087182_25 putative tetratricopeptide repeat protein [Oryza sativa]
Length = 548
Score = 134 bits (337), Expect = 1e-30
Identities = 65/104 (62%), Positives = 81/104 (77%)
Frame = +2
Query: 335 KAWVEANEAKTEGNKLCLEGKYEEAWVQYELALQVAPDMPSSVEIRSIFHSKRAVCLLKL 514
KA +AN+AK EGNK G+YE A QYE ALQ+A ++ S+ +IRS HS RAVC LKL
Sbjct: 371 KARSQANDAKAEGNKFFGAGEYERALSQYETALQIAAELESAEDIRSACHSNRAVCFLKL 430
Query: 515 GKYENTSRECAKALELNPTYVKALVRRGEAHEKLEHNEEGLADL 646
GKY+ T +EC KALELNP+Y+KAL+RRGEAHEKLEH +E +AD+
Sbjct: 431 GKYDETIKECTKALELNPSYLKALLRRGEAHEKLEHYDEAIADM 474
>ref|NP_598556.1| RIKEN cDNA 4833412C19 [Mus musculus] gi|16307388|gb|AAH10236.1|
Similar to tetratricopeptide repeat domain 1 [Mus
musculus] gi|26346653|dbj|BAC36975.1| unnamed protein
product [Mus musculus]
Length = 292
Score = 81.6 bits (200), Expect = 8e-15
Identities = 55/161 (34%), Positives = 76/161 (47%), Gaps = 13/161 (8%)
Frame = +2
Query: 200 PQQHHQEEEDQQQKQVEQEQEQERGDPPSIISSDVASIN-------------DEESNQKA 340
PQ H EEE E+EQ +SD +S EE QK
Sbjct: 53 PQDDHVEEECFHDCSASFEEEQPGAHVAGSKASDDSSSELDEEYLIELEKNMPEEEKQKR 112
Query: 341 WVEANEAKTEGNKLCLEGKYEEAWVQYELALQVAPDMPSSVEIRSIFHSKRAVCLLKLGK 520
E+ + K EGN+ G Y EA Y ALQ+ P + RS+ S RA +K K
Sbjct: 113 REESAKLKEEGNERFKRGDYMEAESSYSQALQMCP--ACFQKDRSVLFSNRAAARMKQDK 170
Query: 521 YENTSRECAKALELNPTYVKALVRRGEAHEKLEHNEEGLAD 643
E +C+KA++LNPTY++A++RR E +EK + +E L D
Sbjct: 171 KETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALED 211
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 621,851,891
Number of Sequences: 1393205
Number of extensions: 15254483
Number of successful extensions: 191818
Number of sequences better than 10.0: 2966
Number of HSP's better than 10.0 without gapping: 92031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146770
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
