Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011748A_C01 KMC011748A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194653.1| extensin-like protein; protein id: At4g29240.1,... 120 7e-27
ref|NP_179568.1| putative disease resistance protein; protein id... 116 2e-25
dbj|BAB91812.1| putative extensin-like protein [Oryza sativa (ja... 70 3e-14
ref|NP_188919.1| hypothetical protein; protein id: At3g22800.1 [... 73 3e-14
ref|NP_193070.1| extensin-like protein; protein id: At4g13340.1 ... 69 4e-13
>ref|NP_194653.1| extensin-like protein; protein id: At4g29240.1, supported by cDNA:
147694. [Arabidopsis thaliana] gi|7487113|pir||T13435
hypothetical protein T17A13.60 - Arabidopsis thaliana
gi|7269822|emb|CAB79682.1| extensin-like protein
[Arabidopsis thaliana] gi|20259474|gb|AAM13857.1|
putative extensin [Arabidopsis thaliana]
gi|21436153|gb|AAM51323.1| putative extensin
[Arabidopsis thaliana]
Length = 415
Score = 120 bits (302), Expect = 7e-27
Identities = 62/125 (49%), Positives = 82/125 (65%), Gaps = 6/125 (4%)
Frame = -1
Query: 511 LFTEMQVLDVSFNALMGHLPDTLSCLEEIEVLNLAHNQLSGEVSDIICSLRSIANLTVSF 332
+F+E++V DVS+NALMGH+PDT+SCL IE+LNLAHN+ SGEV D++CSLR++ NLTV+F
Sbjct: 279 MFSEIEVFDVSYNALMGHVPDTISCLSAIEILNLAHNKFSGEVPDLVCSLRNLINLTVAF 338
Query: 331 NFFSGFSPPCSKPLPLGMWVLISHLTAFLGGICKDLNL-----SVL*FPGGSLSCLRLPT 167
NFFSGFS CS + G F+G N + GG++SC R+PT
Sbjct: 339 NFFSGFSSECSSRVSFGF--------DFVGNCIPGRNSQRPQPDCSGYSGGAMSCFRIPT 390
Query: 166 -PKPC 155
P C
Sbjct: 391 QPLAC 395
Score = 43.5 bits (101), Expect = 0.001
Identities = 19/68 (27%), Positives = 39/68 (56%)
Frame = -1
Query: 511 LFTEMQVLDVSFNALMGHLPDTLSCLEEIEVLNLAHNQLSGEVSDIICSLRSIANLTVSF 332
L +++ +L ++ N G +PD+ L ++ L+L++N+LSG + + ++ L + F
Sbjct: 136 LLSDLNILHLNSNRFSGQIPDSFKSLASLQELDLSNNKLSGPFPLVTLYIPNLVYLDLRF 195
Query: 331 NFFSGFSP 308
N +GF P
Sbjct: 196 NSLTGFIP 203
>ref|NP_179568.1| putative disease resistance protein; protein id: At2g19780.1
[Arabidopsis thaliana] gi|25411928|pir||A84581 probable
disease resistance protein [imported] - Arabidopsis
thaliana gi|3687240|gb|AAC62138.1| putative disease
resistance protein [Arabidopsis thaliana]
gi|28393470|gb|AAO42156.1| putative disease resistance
protein [Arabidopsis thaliana]
gi|28827418|gb|AAO50553.1| putative disease resistance
protein [Arabidopsis thaliana]
Length = 402
Score = 116 bits (290), Expect = 2e-25
Identities = 62/120 (51%), Positives = 83/120 (68%), Gaps = 1/120 (0%)
Frame = -1
Query: 511 LFTEMQVLDVSFNALMGHLPDTLSCLEEIEVLNLAHNQLSGEVSDIICSLRSIANLTVSF 332
LF++++V DVSFN+LMGH+PDT+SCL EIEVLNL HN+ SG++ D++C+LR++ NLTVSF
Sbjct: 274 LFSDIEVFDVSFNSLMGHVPDTISCLSEIEVLNLGHNKFSGDLPDLVCTLRNLINLTVSF 333
Query: 331 NFFSGFSPPCSKPLPLGMWVLISHLTAFLGGICKDLNLSVL*FPGGSLSCLRLPT-PKPC 155
NFFSGFS CS L +G + + G + S + PGG LSC R+P P C
Sbjct: 334 NFFSGFSSQCSS-LSVG-FDFTGNCIPGKGYQRPQPDCSAI--PGGQLSCFRIPAQPLTC 389
Score = 40.0 bits (92), Expect = 0.016
Identities = 27/89 (30%), Positives = 46/89 (51%)
Frame = -1
Query: 490 LDVSFNALMGHLPDTLSCLEEIEVLNLAHNQLSGEVSDIICSLRSIANLTVSFNFFSGFS 311
+D++ L G + LS L ++ +L+L N+ SG++ D +L S+ L +S N FSG
Sbjct: 114 IDLNKANLKGTIVKDLSLLSDLTILHLNSNRFSGQIPDSFKNLDSLQELDLSNNRFSGSF 173
Query: 310 PPCSKPLPLGMWVLISHLTAFLGGICKDL 224
P + +P + L F G I ++L
Sbjct: 174 PQVTLYIP-NLVYLDLRFNNFTGSIPENL 201
>dbj|BAB91812.1| putative extensin-like protein [Oryza sativa (japonica
cultivar-group)] gi|20804618|dbj|BAB92308.1| putative
extensin-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 570
Score = 70.1 bits (170), Expect(2) = 3e-14
Identities = 34/70 (48%), Positives = 47/70 (66%)
Frame = -1
Query: 511 LFTEMQVLDVSFNALMGHLPDTLSCLEEIEVLNLAHNQLSGEVSDIICSLRSIANLTVSF 332
+ T + VLDVS N+LMG +P L+ LE IE L+L HN+L+G+V + IC L + N T S+
Sbjct: 283 MLTGLAVLDVSHNSLMGAIPGELARLENIEQLDLGHNRLTGDVPEGICHLPHLQNFTYSY 342
Query: 331 NFFSGFSPPC 302
NF +G P C
Sbjct: 343 NFITGEPPVC 352
Score = 42.7 bits (99), Expect = 0.002
Identities = 23/68 (33%), Positives = 36/68 (52%)
Frame = -1
Query: 511 LFTEMQVLDVSFNALMGHLPDTLSCLEEIEVLNLAHNQLSGEVSDIICSLRSIANLTVSF 332
L ++ VL + N G +P TL L + L+L++N+L G D++ L S+ L + F
Sbjct: 140 LLADLAVLHANSNRFCGAVPSTLERLHLLHELDLSNNRLVGAFPDVVLRLPSLRYLDLRF 199
Query: 331 NFFSGFSP 308
N F G P
Sbjct: 200 NDFEGPVP 207
Score = 35.0 bits (79), Expect = 0.50
Identities = 21/68 (30%), Positives = 32/68 (46%)
Frame = -1
Query: 490 LDVSFNALMGHLPDTLSCLEEIEVLNLAHNQLSGEVSDIICSLRSIANLTVSFNFFSGFS 311
+D++ + GHLPD L L ++ VL+ N+ G V + L + L +S N G
Sbjct: 123 VDLNHADMAGHLPDELGLLADLAVLHANSNRFCGAVPSTLERLHLLHELDLSNNRLVGAF 182
Query: 310 PPCSKPLP 287
P LP
Sbjct: 183 PDVVLRLP 190
Score = 29.3 bits (64), Expect(2) = 3e-14
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 272 FDFSLNCIPGRDLQRPQPEC 213
FD NCIPGR QRP +C
Sbjct: 358 FDDRRNCIPGRPDQRPAEQC 377
>ref|NP_188919.1| hypothetical protein; protein id: At3g22800.1 [Arabidopsis
thaliana] gi|9279698|dbj|BAB01255.1| extensin
protein-like [Arabidopsis thaliana]
Length = 470
Score = 73.2 bits (178), Expect(2) = 3e-14
Identities = 32/70 (45%), Positives = 47/70 (66%)
Frame = -1
Query: 511 LFTEMQVLDVSFNALMGHLPDTLSCLEEIEVLNLAHNQLSGEVSDIICSLRSIANLTVSF 332
L ++ V DVS+N L+G LP+T+ ++ +E LN+AHN+ SG + + IC L + N T S+
Sbjct: 265 LLNQLTVFDVSYNNLVGSLPETIGDMKSLEQLNIAHNKFSGYIPESICRLPRLENFTYSY 324
Query: 331 NFFSGFSPPC 302
NFFSG P C
Sbjct: 325 NFFSGEPPAC 334
Score = 53.5 bits (127), Expect = 1e-06
Identities = 26/68 (38%), Positives = 40/68 (58%)
Frame = -1
Query: 511 LFTEMQVLDVSFNALMGHLPDTLSCLEEIEVLNLAHNQLSGEVSDIICSLRSIANLTVSF 332
L T++ + ++ N G LP TL CL + L++++N+LSGE +I SL S+ L + F
Sbjct: 121 LLTDLALFHINSNRFQGQLPKTLKCLHLLHELDVSNNKLSGEFPSVIFSLPSLKFLDIRF 180
Query: 331 NFFSGFSP 308
N F G P
Sbjct: 181 NEFQGDVP 188
Score = 26.2 bits (56), Expect(2) = 3e-14
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 272 FDFSLNCIPGRDLQRPQPEC 213
FD NC+P R +QR EC
Sbjct: 340 FDDRRNCLPSRPMQRSLAEC 359
>ref|NP_193070.1| extensin-like protein; protein id: At4g13340.1 [Arabidopsis
thaliana] gi|7484961|pir||T06291 extensin homolog
T9E8.80 - Arabidopsis thaliana
gi|4584539|emb|CAB40769.1| extensin-like protein
[Arabidopsis thaliana] gi|7268037|emb|CAB78376.1|
extensin-like protein [Arabidopsis thaliana]
Length = 760
Score = 68.9 bits (167), Expect(2) = 4e-13
Identities = 31/64 (48%), Positives = 44/64 (68%)
Frame = -1
Query: 493 VLDVSFNALMGHLPDTLSCLEEIEVLNLAHNQLSGEVSDIICSLRSIANLTVSFNFFSGF 314
V DVSFN L+G LP+++ + +E LN+AHN LSG++ IC L + N T S+NFF+G
Sbjct: 284 VFDVSFNELVGPLPESVGEMVSVEQLNVAHNMLSGKIPASICQLPKLENFTYSYNFFTGE 343
Query: 313 SPPC 302
+P C
Sbjct: 344 APVC 347
Score = 26.6 bits (57), Expect(2) = 4e-13
Identities = 11/26 (42%), Positives = 13/26 (49%)
Frame = -3
Query: 272 FDFSLNCIPGRDLQRPQPECSVIPRR 195
FD NC+PGR QR +C R
Sbjct: 353 FDDRRNCLPGRPAQRSPGQCKAFLSR 378
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,500,194
Number of Sequences: 1393205
Number of extensions: 9263271
Number of successful extensions: 29765
Number of sequences better than 10.0: 978
Number of HSP's better than 10.0 without gapping: 25532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29421
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
