Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011728A_C01 KMC011728A_c01
(655 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S49463 RNA-binding protein RNP1 precursor - kidney bean gi|... 146 2e-34
ref|NP_176208.1| chloroplast RNA-binding protein, putative; prot... 135 4e-31
pir||T12196 RNA-binding protein - fava bean (fragment) gi|210468... 135 4e-31
dbj|BAC10140.1| putative ribonucleoprotein [Oryza sativa (japoni... 91 1e-17
emb|CAD18921.1| RNA-binding protein precursor [Persea americana] 90 3e-17
>pir||S49463 RNA-binding protein RNP1 precursor - kidney bean
gi|558629|emb|CAA57551.1| chloroplast RNA binding
protein [Phaseolus vulgaris]
Length = 287
Score = 146 bits (369), Expect = 2e-34
Identities = 71/88 (80%), Positives = 80/88 (90%)
Frame = -2
Query: 654 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 475
PETEHKLFVGNLSW+VT+E L Q FQEYGTVVGARVLYDGETGRSRGYGFVC+S + E+E
Sbjct: 200 PETEHKLFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKEEME 259
Query: 474 TALISLNNVELEGRAIRVSLAEGKRS*G 391
AL +LN+VELEGRA+RVSLAEGKR+ G
Sbjct: 260 AALGALNDVELEGRAMRVSLAEGKRAQG 287
Score = 57.8 bits (138), Expect = 1e-07
Identities = 29/76 (38%), Positives = 45/76 (59%)
Frame = -2
Query: 639 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 460
KL+ GNL ++V S L + Q+YG+ VLYD +TG+SRG+ FV S + + +
Sbjct: 114 KLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIEN 173
Query: 459 LNNVELEGRAIRVSLA 412
L+ E GR +RV+ +
Sbjct: 174 LDGKEYLGRTLRVNFS 189
>ref|NP_176208.1| chloroplast RNA-binding protein, putative; protein id: At1g60000.1,
supported by cDNA: 41722., supported by cDNA:
gi_13194797 [Arabidopsis thaliana]
gi|25386566|pir||C96624 hypothetical protein T2K10.5
[imported] - Arabidopsis thaliana
gi|4249379|gb|AAD14476.1|AAD14476 Strong similarity to
gb|X82030 chloroplast RNA binding protein (RNP1) from
Phaseolus vulgaris. [Arabidopsis thaliana]
gi|13194798|gb|AAK15561.1|AF348590_1 putative nucleic
acid-binding protein [Arabidopsis thaliana]
gi|21593720|gb|AAM65687.1| nucleic acid-binding protein,
putative [Arabidopsis thaliana]
Length = 258
Score = 135 bits (341), Expect = 4e-31
Identities = 65/85 (76%), Positives = 76/85 (88%)
Frame = -2
Query: 654 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 475
PETEHKLFVGNLSWTVTSESL F+E G VVGARV++DG+TGRSRGYGFVCYS ++E+E
Sbjct: 173 PETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEME 232
Query: 474 TALISLNNVELEGRAIRVSLAEGKR 400
TAL SL+ ELEGRAIRV+LA+GK+
Sbjct: 233 TALESLDGFELEGRAIRVNLAQGKK 257
Score = 57.8 bits (138), Expect = 1e-07
Identities = 28/77 (36%), Positives = 46/77 (59%)
Frame = -2
Query: 639 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 460
KL+ GNL + V S +L Q+ Q++ VLY+ +TG+SRG+ FV S + + +
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 459 LNNVELEGRAIRVSLAE 409
L+ E GRA++V+ A+
Sbjct: 146 LDGTEYLGRALKVNFAD 162
>pir||T12196 RNA-binding protein - fava bean (fragment)
gi|2104687|emb|CAA66479.1| RNA- or ssDNA-binding protein
[Vicia faba]
Length = 289
Score = 135 bits (341), Expect = 4e-31
Identities = 64/86 (74%), Positives = 76/86 (87%)
Frame = -2
Query: 654 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 475
PETE+KLF+GNLSW VTSE L + FQE+GTVVGARV+YDGETG SRGYGFV Y+ +SE+E
Sbjct: 204 PETEYKLFIGNLSWKVTSEILTEAFQEHGTVVGARVIYDGETGNSRGYGFVSYANKSEME 263
Query: 474 TALISLNNVELEGRAIRVSLAEGKRS 397
AL +N+VELEGRA+RVSLA+GKRS
Sbjct: 264 AALTIMNDVELEGRALRVSLAQGKRS 289
Score = 59.3 bits (142), Expect = 4e-08
Identities = 28/81 (34%), Positives = 48/81 (58%)
Frame = -2
Query: 651 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 472
+T KL+ GNL ++V S L + +EYG+ VLYD +TG+SRG+ F + + +
Sbjct: 114 DTRTKLYFGNLPYSVDSAKLAGLIEEYGSAELVEVLYDRDTGKSRGFAFATMTCVEDCKA 173
Query: 471 ALISLNNVELEGRAIRVSLAE 409
+ +L+ E GR +RV+ ++
Sbjct: 174 VIENLDGKEFMGRTLRVNFSD 194
>dbj|BAC10140.1| putative ribonucleoprotein [Oryza sativa (japonica cultivar-group)]
Length = 264
Score = 90.9 bits (224), Expect = 1e-17
Identities = 41/83 (49%), Positives = 62/83 (74%)
Frame = -2
Query: 651 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 472
++ +KL+VGNL+W V + +L +F E GTV+ A+V+YD E+GRSRG+GFV Y E+
Sbjct: 177 DSSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNN 236
Query: 471 ALISLNNVELEGRAIRVSLAEGK 403
A+ +L+ V+L+GR IRV++AE K
Sbjct: 237 AISNLDGVDLDGRQIRVTVAESK 259
Score = 64.3 bits (155), Expect = 1e-09
Identities = 32/74 (43%), Positives = 46/74 (61%)
Frame = -2
Query: 639 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 460
K+FVGNL ++V S L +F++ G+V V+YD +TGRSRG+GFV S E A+
Sbjct: 81 KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQ 140
Query: 459 LNNVELEGRAIRVS 418
N +GR +RV+
Sbjct: 141 FNGYTFQGRPLRVN 154
>emb|CAD18921.1| RNA-binding protein precursor [Persea americana]
Length = 300
Score = 89.7 bits (221), Expect = 3e-17
Identities = 44/83 (53%), Positives = 60/83 (72%)
Frame = -2
Query: 651 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 472
E +++VGNL W V L QVF E+G VV ARV+YD ETGRSRG+GFV S ++EL+
Sbjct: 212 EPAFRMYVGNLPWQVDDARLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSTQTELDD 271
Query: 471 ALISLNNVELEGRAIRVSLAEGK 403
A+ +L+ L+GRAIRV++AE +
Sbjct: 272 AIAALDGQSLDGRAIRVNVAEDR 294
Score = 67.8 bits (164), Expect = 1e-10
Identities = 35/81 (43%), Positives = 50/81 (61%)
Frame = -2
Query: 654 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 475
P E KLFVGNL + V ++L ++F + GTV A V+Y+ ET +SRG+GFV S E E
Sbjct: 117 PPEEAKLFVGNLPYDVDHQALAELFDQAGTVEVAEVIYNRETDQSRGFGFVTMSTVEEAE 176
Query: 474 TALISLNNVELEGRAIRVSLA 412
A+ N ++ GR + V+ A
Sbjct: 177 KAVEMFNRYDINGRLLTVNKA 197
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,527,365
Number of Sequences: 1393205
Number of extensions: 11171936
Number of successful extensions: 28353
Number of sequences better than 10.0: 2270
Number of HSP's better than 10.0 without gapping: 26267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28069
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
