Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011720A_C01 KMC011720A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565533.1| putative DnaJ protein; protein id: At2g22360.1,... 168 5e-41
pir||G84611 probable DnaJ protein [imported] - Arabidopsis thaliana 168 5e-41
gb|AAM60893.1| putative DnaJ protein [Arabidopsis thaliana] 167 7e-41
ref|NP_568076.1| DnaJ - like protein; protein id: At4g39960.1, s... 160 1e-38
pir||T06102 heat shock protein T5J17.130, dnaJ-type - Arabidopsi... 160 1e-38
>ref|NP_565533.1| putative DnaJ protein; protein id: At2g22360.1, supported by cDNA:
10312. [Arabidopsis thaliana] gi|20197886|gb|AAD22362.2|
putative DnaJ protein [Arabidopsis thaliana]
Length = 442
Score = 168 bits (425), Expect = 5e-41
Identities = 83/99 (83%), Positives = 90/99 (90%)
Frame = -3
Query: 578 EDHNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPSSTLVMAKKGVPVLNKKNM 399
+D NILYTCK+SYIDAILGTT+KVPTVDG VDLK+PAGTQPS+TLVMAKKGVPVLNK NM
Sbjct: 342 DDTNILYTCKISYIDAILGTTLKVPTVDGTVDLKVPAGTQPSTTLVMAKKGVPVLNKSNM 401
Query: 398 RGDPLVRVQVEIPNRLSSDEKKLIEELADLSKGKAATST 282
RGD LVRVQVEIP RLS +EKKLIEELAD+SK K A ST
Sbjct: 402 RGDQLVRVQVEIPKRLSKEEKKLIEELADMSKNKTANST 440
>pir||G84611 probable DnaJ protein [imported] - Arabidopsis thaliana
Length = 391
Score = 168 bits (425), Expect = 5e-41
Identities = 83/99 (83%), Positives = 90/99 (90%)
Frame = -3
Query: 578 EDHNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPSSTLVMAKKGVPVLNKKNM 399
+D NILYTCK+SYIDAILGTT+KVPTVDG VDLK+PAGTQPS+TLVMAKKGVPVLNK NM
Sbjct: 291 DDTNILYTCKISYIDAILGTTLKVPTVDGTVDLKVPAGTQPSTTLVMAKKGVPVLNKSNM 350
Query: 398 RGDPLVRVQVEIPNRLSSDEKKLIEELADLSKGKAATST 282
RGD LVRVQVEIP RLS +EKKLIEELAD+SK K A ST
Sbjct: 351 RGDQLVRVQVEIPKRLSKEEKKLIEELADMSKNKTANST 389
>gb|AAM60893.1| putative DnaJ protein [Arabidopsis thaliana]
Length = 442
Score = 167 bits (424), Expect = 7e-41
Identities = 82/99 (82%), Positives = 90/99 (90%)
Frame = -3
Query: 578 EDHNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPSSTLVMAKKGVPVLNKKNM 399
+D N+LYTCK+SYIDAILGTT+KVPTVDG VDLK+PAGTQPS+TLVMAKKGVPVLNK NM
Sbjct: 342 DDTNVLYTCKISYIDAILGTTLKVPTVDGTVDLKVPAGTQPSTTLVMAKKGVPVLNKSNM 401
Query: 398 RGDPLVRVQVEIPNRLSSDEKKLIEELADLSKGKAATST 282
RGD LVRVQVEIP RLS +EKKLIEELAD+SK K A ST
Sbjct: 402 RGDQLVRVQVEIPKRLSKEEKKLIEELADMSKNKTANST 440
>ref|NP_568076.1| DnaJ - like protein; protein id: At4g39960.1, supported by cDNA:
gi_15450580, supported by cDNA: gi_17380627 [Arabidopsis
thaliana] gi|15450581|gb|AAK96562.1| AT4g39960/T5J17_130
[Arabidopsis thaliana] gi|17380628|gb|AAL36077.1|
AT4g39960/T5J17_130 [Arabidopsis thaliana]
Length = 447
Score = 160 bits (405), Expect = 1e-38
Identities = 78/98 (79%), Positives = 87/98 (88%)
Frame = -3
Query: 578 EDHNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPSSTLVMAKKGVPVLNKKNM 399
+D NILYTCK+SY+DAILGTT+KVPTVDG VDLK+PAGTQPS+TLVMAKKGVPVLNK M
Sbjct: 348 DDTNILYTCKISYVDAILGTTLKVPTVDGEVDLKVPAGTQPSTTLVMAKKGVPVLNKSKM 407
Query: 398 RGDPLVRVQVEIPNRLSSDEKKLIEELADLSKGKAATS 285
RGD LVRVQVEIP RLS +EK L+EELAD+SK K A S
Sbjct: 408 RGDQLVRVQVEIPKRLSKEEKMLVEELADMSKNKVANS 445
>pir||T06102 heat shock protein T5J17.130, dnaJ-type - Arabidopsis thaliana
gi|4490747|emb|CAB38909.1| DnaJ-like protein
[Arabidopsis thaliana] gi|7271051|emb|CAB80659.1|
DnaJ-like protein [Arabidopsis thaliana]
Length = 396
Score = 160 bits (405), Expect = 1e-38
Identities = 78/98 (79%), Positives = 87/98 (88%)
Frame = -3
Query: 578 EDHNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPSSTLVMAKKGVPVLNKKNM 399
+D NILYTCK+SY+DAILGTT+KVPTVDG VDLK+PAGTQPS+TLVMAKKGVPVLNK M
Sbjct: 297 DDTNILYTCKISYVDAILGTTLKVPTVDGEVDLKVPAGTQPSTTLVMAKKGVPVLNKSKM 356
Query: 398 RGDPLVRVQVEIPNRLSSDEKKLIEELADLSKGKAATS 285
RGD LVRVQVEIP RLS +EK L+EELAD+SK K A S
Sbjct: 357 RGDQLVRVQVEIPKRLSKEEKMLVEELADMSKNKVANS 394
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 533,271,946
Number of Sequences: 1393205
Number of extensions: 11912792
Number of successful extensions: 26111
Number of sequences better than 10.0: 402
Number of HSP's better than 10.0 without gapping: 25121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25971
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
