Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011719A_C01 KMC011719A_c01
(467 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S14305 chlorophyll a/b-binding protein (cab-11) - tomato 150 2e-51
pir||T51616 chlorophyll a/b-binding protein [imported] - garden ... 152 3e-51
ref|NP_084540.1| cDNA sequence BC002118; hypothetical protein, M... 137 3e-47
ref|NP_680103.1| light-harvesting chlorophyll a/b binding protei... 139 4e-47
pir||S14306 chlorophyll a/b-binding protein (cab-12) - tomato 131 2e-45
>pir||S14305 chlorophyll a/b-binding protein (cab-11) - tomato
Length = 251
Score = 150 bits (380), Expect(2) = 2e-51
Identities = 76/106 (71%), Positives = 85/106 (79%)
Frame = +3
Query: 48 MATVTTQASAAMFRACASRSRFLTGSSGKLNREVAFRPRGCPPSTSFKVEARKGEWLPGL 227
MATVTTQASAA+FR CASR+RFLTGSSGKLNREV+FRP SFKVEA+KG+WLPGL
Sbjct: 1 MATVTTQASAAIFRPCASRTRFLTGSSGKLNREVSFRPSTSSSYNSFKVEAKKGQWLPGL 60
Query: 228 ASPNYLNGSLSWMTMGLSPLALAEDPENLKWFVQAELVNGAMGQVG 365
ASP+YL+GSL G PL L EDPENLKWF+QAELVNG +G
Sbjct: 61 ASPDYLDGSLPG-DNGFDPLGLVEDPENLKWFIQAELVNGRWAMLG 105
Score = 73.2 bits (178), Expect(2) = 2e-51
Identities = 32/39 (82%), Positives = 36/39 (92%)
Frame = +1
Query: 349 RWARLGVAGMLLPEVLTNIGLITVPKWYDAGKAEYFASS 465
RWA LGVAGMLLPEV T+IG++ VPKWYDAGK+EYFASS
Sbjct: 100 RWAMLGVAGMLLPEVFTSIGILNVPKWYDAGKSEYFASS 138
>pir||T51616 chlorophyll a/b-binding protein [imported] - garden pea
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna
chlorophyll a/b-binding protein [Pisum sativum]
Length = 252
Score = 152 bits (385), Expect(2) = 3e-51
Identities = 78/106 (73%), Positives = 83/106 (77%)
Frame = +3
Query: 48 MATVTTQASAAMFRACASRSRFLTGSSGKLNREVAFRPRGCPPSTSFKVEARKGEWLPGL 227
MATVTTQASAA+F C +SRFL GSSGKLNR VAFRP GC PS SFKVEA+KGEWLPGL
Sbjct: 1 MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGL 60
Query: 228 ASPNYLNGSLSWMTMGLSPLALAEDPENLKWFVQAELVNGAMGQVG 365
ASP YL GSL G PL LAEDPENL+WFVQAELVNG +G
Sbjct: 61 ASPGYLTGSLPG-DNGFDPLGLAEDPENLRWFVQAELVNGRWAMLG 105
Score = 70.1 bits (170), Expect(2) = 3e-51
Identities = 32/39 (82%), Positives = 34/39 (87%)
Frame = +1
Query: 349 RWARLGVAGMLLPEVLTNIGLITVPKWYDAGKAEYFASS 465
RWA LGVAGMLLPEV T+IG+I VPKWY AGK EYFASS
Sbjct: 100 RWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASS 138
>ref|NP_084540.1| cDNA sequence BC002118; hypothetical protein, MGC:6623 [Mus
musculus] gi|12805303|gb|AAH02118.1| Unknown (protein
for MGC:6623) [Mus musculus]
Length = 252
Score = 137 bits (344), Expect(2) = 3e-47
Identities = 72/106 (67%), Positives = 78/106 (72%)
Frame = +3
Query: 48 MATVTTQASAAMFRACASRSRFLTGSSGKLNREVAFRPRGCPPSTSFKVEARKGEWLPGL 227
MA VTTQAS A FR CAS+SRFLTG+ GKLN+E R + S KVEA+KGEWLPGL
Sbjct: 1 MAAVTTQASIAGFRPCASKSRFLTGAPGKLNKECGVRLPSTSSTNSLKVEAKKGEWLPGL 60
Query: 228 ASPNYLNGSLSWMTMGLSPLALAEDPENLKWFVQAELVNGAMGQVG 365
ASP YLNGSL G PLALAEDPENLKWFVQAELVNG +G
Sbjct: 61 ASPAYLNGSLPG-DNGFDPLALAEDPENLKWFVQAELVNGRWAMLG 105
Score = 72.8 bits (177), Expect(2) = 3e-47
Identities = 33/39 (84%), Positives = 34/39 (86%)
Frame = +1
Query: 349 RWARLGVAGMLLPEVLTNIGLITVPKWYDAGKAEYFASS 465
RWA LGVAGMLLPEV T IG+I VPKWYDAGK EYFASS
Sbjct: 100 RWAMLGVAGMLLPEVFTQIGIINVPKWYDAGKQEYFASS 138
>ref|NP_680103.1| light-harvesting chlorophyll a/b binding protein; protein id:
At3g47470.2, supported by cDNA: 2531., supported by
cDNA: gi_166645, supported by cDNA: gi_20260361
[Arabidopsis thaliana] gi|115385|sp|P27521|CB24_ARATH
Chlorophyll A-B binding protein 4, chloroplast precursor
(LHCI type III CAB-4) (LHCP) gi|11277628|pir||T45707
CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog -
Arabidopsis thaliana gi|166646|gb|AAA32760.1|
light-harvesting chlorophyll a/b binding protein
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING
PROTEIN 4 PRECURSOR homolog [Arabidopsis thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding
protein 4 precursor homolog [Arabidopsis thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding
protein 4 precursor homolog [Arabidopsis thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding
protein 4 precursor homolog [Arabidopsis thaliana]
Length = 251
Score = 139 bits (350), Expect(2) = 4e-47
Identities = 72/107 (67%), Positives = 83/107 (77%), Gaps = 1/107 (0%)
Frame = +3
Query: 48 MATVTTQASAAMFRACASRSRFLTGSSGKLNREVAFRPRGCPPST-SFKVEARKGEWLPG 224
MATVTT ASA++FR C S+ RFLTGSSG+LNR+++F G T SFKVEA+KGEWLPG
Sbjct: 1 MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPG 60
Query: 225 LASPNYLNGSLSWMTMGLSPLALAEDPENLKWFVQAELVNGAMGQVG 365
LASP+YL GSL+ G PL LAEDPENLKWFVQAELVNG +G
Sbjct: 61 LASPDYLTGSLAG-DNGFDPLGLAEDPENLKWFVQAELVNGRWAMLG 106
Score = 70.1 bits (170), Expect(2) = 4e-47
Identities = 31/39 (79%), Positives = 34/39 (86%)
Frame = +1
Query: 349 RWARLGVAGMLLPEVLTNIGLITVPKWYDAGKAEYFASS 465
RWA LGVAGMLLPEV T IG+I VP+WYDAGK +YFASS
Sbjct: 101 RWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASS 139
>pir||S14306 chlorophyll a/b-binding protein (cab-12) - tomato
Length = 250
Score = 131 bits (329), Expect(2) = 2e-45
Identities = 69/106 (65%), Positives = 80/106 (75%)
Frame = +3
Query: 48 MATVTTQASAAMFRACASRSRFLTGSSGKLNREVAFRPRGCPPSTSFKVEARKGEWLPGL 227
MATVTTQASAA+F A+++RFL GSSGKLNR+ +F+ SFKVEA+KGEWLPGL
Sbjct: 1 MATVTTQASAAVFPPSATKTRFLNGSSGKLNRDFSFK-SSTLSYNSFKVEAKKGEWLPGL 59
Query: 228 ASPNYLNGSLSWMTMGLSPLALAEDPENLKWFVQAELVNGAMGQVG 365
SP YLNGSL+ G PL LAEDPENL+WFVQAELVNG +G
Sbjct: 60 TSPTYLNGSLAG-DNGFDPLGLAEDPENLRWFVQAELVNGRWAMLG 104
Score = 72.8 bits (177), Expect(2) = 2e-45
Identities = 32/39 (82%), Positives = 36/39 (92%)
Frame = +1
Query: 349 RWARLGVAGMLLPEVLTNIGLITVPKWYDAGKAEYFASS 465
RWA LGVAGMLLPEV T+IGL+ VPKWYDAGK++YFASS
Sbjct: 99 RWAMLGVAGMLLPEVFTSIGLLNVPKWYDAGKSDYFASS 137
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,081,751
Number of Sequences: 1393205
Number of extensions: 10782864
Number of successful extensions: 34115
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 32792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34058
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
