Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011708A_C01 KMC011708A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568717.1| putative protein; protein id: At5g49970.1, supp... 140 6e-33
gb|AAM65907.1| contains similarity to pyridoxamine 5-phosphate o... 140 6e-33
dbj|BAA97018.1| contains similarity to pyridoxamine 5-phosphate ... 140 6e-33
gb|AAM08545.1|AC079935_17 Putative pyridoxamine 5-phosphate oxid... 137 5e-32
ref|NP_060599.1| pyridoxine 5'-phosphate oxidase [Homo sapiens] ... 98 6e-20
>ref|NP_568717.1| putative protein; protein id: At5g49970.1, supported by cDNA: 6244.
[Arabidopsis thaliana] gi|22022585|gb|AAM83249.1|
AT5g49970/K9P8_11 [Arabidopsis thaliana]
gi|23308409|gb|AAN18174.1| At5g49970/K9P8_11
[Arabidopsis thaliana]
Length = 466
Score = 140 bits (354), Expect = 6e-33
Identities = 70/100 (70%), Positives = 82/100 (82%), Gaps = 2/100 (2%)
Frame = -3
Query: 505 RVEGSVEKVPEEESEQYFHSRPRGSQIGAIVSKQSSVVPGRHVLYEEYEELERKFADGSL 326
R+EG VE++PE ESE YFHSRPRGSQIGAIVSKQSSVVPGRHVLY+EYEEL ++++DGS+
Sbjct: 356 RIEGPVERIPESESENYFHSRPRGSQIGAIVSKQSSVVPGRHVLYDEYEELTKQYSDGSV 415
Query: 325 IPKP*ELG--RIQANSKTSFEFWQGQKSRLHDRLRYVPHD 212
IPKP G R++ N FEFWQGQ SRLHDRL+Y D
Sbjct: 416 IPKPKNWGGFRLKPN---LFEFWQGQPSRLHDRLQYSLQD 452
Score = 35.8 bits (81), Expect = 0.29
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -1
Query: 315 PKSWGGYRLTPKPLLNFGKDRSLACMTG*DMFPMTINGQRLWKVERLAP 169
PK+WGG+RL P L F + + +NG WK+ RLAP
Sbjct: 419 PKNWGGFRLKPN-LFEFWQGQPSRLHDRLQYSLQDVNGNPAWKIHRLAP 466
>gb|AAM65907.1| contains similarity to pyridoxamine 5-phosphate oxidase
[Arabidopsis thaliana]
Length = 466
Score = 140 bits (354), Expect = 6e-33
Identities = 70/100 (70%), Positives = 82/100 (82%), Gaps = 2/100 (2%)
Frame = -3
Query: 505 RVEGSVEKVPEEESEQYFHSRPRGSQIGAIVSKQSSVVPGRHVLYEEYEELERKFADGSL 326
R+EG VE++PE ESE YFHSRPRGSQIGAIVSKQSSVVPGRHVLY+EYEEL ++++DGS+
Sbjct: 356 RIEGPVERIPESESENYFHSRPRGSQIGAIVSKQSSVVPGRHVLYDEYEELTKQYSDGSV 415
Query: 325 IPKP*ELG--RIQANSKTSFEFWQGQKSRLHDRLRYVPHD 212
IPKP G R++ N FEFWQGQ SRLHDRL+Y D
Sbjct: 416 IPKPKNWGGFRLKPN---LFEFWQGQPSRLHDRLQYSLQD 452
Score = 35.8 bits (81), Expect = 0.29
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -1
Query: 315 PKSWGGYRLTPKPLLNFGKDRSLACMTG*DMFPMTINGQRLWKVERLAP 169
PK+WGG+RL P L F + + +NG WK+ RLAP
Sbjct: 419 PKNWGGFRLKPN-LFEFWQGQPSRLHDRLQYSLQDVNGNPAWKIHRLAP 466
>dbj|BAA97018.1| contains similarity to pyridoxamine 5-phosphate
oxidase~gene_id:K9P8.11 [Arabidopsis thaliana]
Length = 530
Score = 140 bits (354), Expect = 6e-33
Identities = 70/100 (70%), Positives = 82/100 (82%), Gaps = 2/100 (2%)
Frame = -3
Query: 505 RVEGSVEKVPEEESEQYFHSRPRGSQIGAIVSKQSSVVPGRHVLYEEYEELERKFADGSL 326
R+EG VE++PE ESE YFHSRPRGSQIGAIVSKQSSVVPGRHVLY+EYEEL ++++DGS+
Sbjct: 420 RIEGPVERIPESESENYFHSRPRGSQIGAIVSKQSSVVPGRHVLYDEYEELTKQYSDGSV 479
Query: 325 IPKP*ELG--RIQANSKTSFEFWQGQKSRLHDRLRYVPHD 212
IPKP G R++ N FEFWQGQ SRLHDRL+Y D
Sbjct: 480 IPKPKNWGGFRLKPN---LFEFWQGQPSRLHDRLQYSLQD 516
Score = 35.8 bits (81), Expect = 0.29
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -1
Query: 315 PKSWGGYRLTPKPLLNFGKDRSLACMTG*DMFPMTINGQRLWKVERLAP 169
PK+WGG+RL P L F + + +NG WK+ RLAP
Sbjct: 483 PKNWGGFRLKPN-LFEFWQGQPSRLHDRLQYSLQDVNGNPAWKIHRLAP 530
>gb|AAM08545.1|AC079935_17 Putative pyridoxamine 5-phosphate oxidase [Oryza sativa]
Length = 473
Score = 137 bits (346), Expect = 5e-32
Identities = 66/94 (70%), Positives = 81/94 (85%)
Frame = -3
Query: 505 RVEGSVEKVPEEESEQYFHSRPRGSQIGAIVSKQSSVVPGRHVLYEEYEELERKFADGSL 326
RVEGSV+KVPEEESE+YFHSRPRGSQ+GAIVSKQS+++PGR VL + Y+ELE+K++DGS+
Sbjct: 363 RVEGSVQKVPEEESEKYFHSRPRGSQLGAIVSKQSTIIPGREVLQQAYKELEQKYSDGSV 422
Query: 325 IPKP*ELGRIQANSKTSFEFWQGQKSRLHDRLRY 224
IPKP G + K FEFWQGQ+SRLHDRL+Y
Sbjct: 423 IPKPDYWGGYRLTPKL-FEFWQGQQSRLHDRLQY 455
>ref|NP_060599.1| pyridoxine 5'-phosphate oxidase [Homo sapiens]
gi|28948989|pdb|1NRG|A Chain A, Structure And Properties
Of Recombinant Human Pyridoxine-5'- Phosphate Oxidase
gi|7022629|dbj|BAA91668.1| unnamed protein product [Homo
sapiens] gi|13676378|gb|AAH06525.1|AAH06525 hypothetical
protein FLJ10535 [Homo sapiens]
gi|21728336|gb|AAM76918.1|AF468030_1
pyridoxine-5'-phosphate oxidase [Homo sapiens]
Length = 261
Score = 97.8 bits (242), Expect = 6e-20
Identities = 57/117 (48%), Positives = 74/117 (62%), Gaps = 3/117 (2%)
Frame = -3
Query: 505 RVEGSVEKVPEEESEQYFHSRPRGSQIGAIVSKQSSVVPGRHVLYEEYEELERKFADGSL 326
RVEG V+K+PEEE+E YFHSRP+ SQIGA+VS QSSV+P R L ++ EELE+ + D
Sbjct: 141 RVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQE- 199
Query: 325 IPKP*ELGRIQANSKTSFEFWQGQKSRLHDRL---RYVPHDDQWTATVEG*AIGPLT 164
+PKP G + EFWQGQ +RLHDR+ R +P D +GP+T
Sbjct: 200 VPKPKSWGGYVLYPQV-MEFWQGQTNRLHDRIVFRRGLPTGDS--------PLGPMT 247
Score = 33.1 bits (74), Expect = 1.9
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Frame = -1
Query: 375 FMRSTKSWNENLLMEV*SRNPKSWGGYRLTPKPL------LNFGKDRSL---ACMTG*D- 226
++R E L + PKSWGGY L P+ + N DR + TG
Sbjct: 183 YLRKKNEELEQLYQDQEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIVFRRGLPTGDSP 242
Query: 225 MFPMTINGQRLWKVERLAP 169
+ PMT G+ W ERLAP
Sbjct: 243 LGPMTHRGEEDWLYERLAP 261
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,105,326
Number of Sequences: 1393205
Number of extensions: 9133770
Number of successful extensions: 29463
Number of sequences better than 10.0: 114
Number of HSP's better than 10.0 without gapping: 24506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27344
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
