Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011705A_C01 KMC011705A_c01
(969 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P80269|NUIM_SOLTU NADH-ubiquinone oxidoreductase 23 kDa subun... 407 e-112
pir||S52385 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ... 404 e-111
sp|O24143|NUIM_TOBAC NADH-ubiquinone oxidoreductase 23 kDa subun... 395 e-109
ref|NP_173114.1| NADH:ubiquinone oxidoreductase, putative; prote... 386 e-106
ref|NP_178022.1| NADH dehydrogenase, putative; protein id: At1g7... 377 e-103
>sp|P80269|NUIM_SOLTU NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
precursor (Complex I-23KD) (CI-23KD) (Complex I-28.5KD)
(CI-28.5KD) gi|1076670|pir||S52386 NADH2 dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain TYKY.1 precursor -
potato gi|668985|emb|CAA59062.1| NADH dehydrogenase;
NADH:ubiquinone oxidoreductase (complex I) [Solanum
tuberosum]
Length = 229
Score = 407 bits (1046), Expect = e-112
Identities = 198/229 (86%), Positives = 211/229 (91%), Gaps = 1/229 (0%)
Frame = +1
Query: 4 MAAFLARKSLQALRTRQLAVAGQGLQSSQNYGMRL-SAHSYATKHSFSNDKDDEEREKLA 180
MAA LARKSL ALR+RQL +AG ++ + Y L S+ATKHSFS DKDDEERE+LA
Sbjct: 1 MAAILARKSLSALRSRQLVLAGHTIEGTNGYNRTLLGTRSFATKHSFSTDKDDEEREQLA 60
Query: 181 REISKDWSSVFERSINTLFLTELVRGLMLTLKYFFEQKVTINYPFEKGPLSPRFRGEHAL 360
+E+SKDW+SVFERSINTLFLTE+VRGLMLTLKYFFE+KVTINYPFEKGPLSPRFRGEHAL
Sbjct: 61 KELSKDWNSVFERSINTLFLTEMVRGLMLTLKYFFEKKVTINYPFEKGPLSPRFRGEHAL 120
Query: 361 RRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACP 540
RRY TGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACP
Sbjct: 121 RRYATGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACP 180
Query: 541 VDAIVEGPNFEFVTETHEELLYDQEKLLENGDRWETEIAENLRSESLYR 687
VDAIVEGPNFEF TETHEELLYD+EKLLENGDRWETEIAENLRSESLYR
Sbjct: 181 VDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 229
>pir||S52385 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain TYKY.2
precursor - potato gi|668987|emb|CAA59063.1| NADH
dehydrogenase; NADH:ubiquinone oxidoreductase (complex
I) [Solanum tuberosum]
Length = 229
Score = 404 bits (1037), Expect = e-111
Identities = 198/229 (86%), Positives = 209/229 (90%), Gaps = 1/229 (0%)
Frame = +1
Query: 4 MAAFLARKSLQALRTRQLAVAGQGLQSSQN-YGMRLSAHSYATKHSFSNDKDDEEREKLA 180
MAA LARKSL ALR+RQL +AGQ Q + G L S+ATKHSFS DKDDEERE+LA
Sbjct: 1 MAAILARKSLSALRSRQLVLAGQAWQGTNTPNGTLLGTRSFATKHSFSTDKDDEEREQLA 60
Query: 181 REISKDWSSVFERSINTLFLTELVRGLMLTLKYFFEQKVTINYPFEKGPLSPRFRGEHAL 360
+E+SKDW+SVFERSINTLFLTE+VRGLMLTLKYFFE+KVTINYPFEKGPLSPRFRGEHAL
Sbjct: 61 KELSKDWNSVFERSINTLFLTEMVRGLMLTLKYFFEKKVTINYPFEKGPLSPRFRGEHAL 120
Query: 361 RRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACP 540
RY TGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACP
Sbjct: 121 HRYATGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACP 180
Query: 541 VDAIVEGPNFEFVTETHEELLYDQEKLLENGDRWETEIAENLRSESLYR 687
VDAIVEGPNFEF TETHEELLYD+EKLLENGDRWE EIAENLRSESLYR
Sbjct: 181 VDAIVEGPNFEFATETHEELLYDKEKLLENGDRWEIEIAENLRSESLYR 229
>sp|O24143|NUIM_TOBAC NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
precursor (Complex I-23KD) (CI-23KD) (Complex I-28.5KD)
(CI-28.5KD) gi|1666177|emb|CAA70326.1| NADH
dehydrogenase; NADH:ubiquinone oxidoreductase (complex
I) [Nicotiana tabacum]
Length = 230
Score = 395 bits (1015), Expect = e-109
Identities = 194/230 (84%), Positives = 206/230 (89%), Gaps = 2/230 (0%)
Frame = +1
Query: 4 MAAFLARKSLQALRTRQLAVAGQGLQSSQNY--GMRLSAHSYATKHSFSNDKDDEEREKL 177
MAA LARKSL ALR+RQL +AGQ Q N G L ++AT SFS DKDDEERE+L
Sbjct: 1 MAAILARKSLSALRSRQLVLAGQAWQQGANTSNGTLLGTRTFATNDSFSTDKDDEEREQL 60
Query: 178 AREISKDWSSVFERSINTLFLTELVRGLMLTLKYFFEQKVTINYPFEKGPLSPRFRGEHA 357
A+E+SKDW+SVFE+ INTLFLTE+VRGLMLTLKYFFE+KVTINYPFEKGPLSPRFRGE
Sbjct: 61 AKELSKDWNSVFEQQINTLFLTEMVRGLMLTLKYFFEKKVTINYPFEKGPLSPRFRGEQP 120
Query: 358 LRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEAC 537
LRRYPTGEERCIACKLCEAICPAQAITIEAE REDGSRRTTRYDIDMTKCIYCGFCQEAC
Sbjct: 121 LRRYPTGEERCIACKLCEAICPAQAITIEAEAREDGSRRTTRYDIDMTKCIYCGFCQEAC 180
Query: 538 PVDAIVEGPNFEFVTETHEELLYDQEKLLENGDRWETEIAENLRSESLYR 687
PVDAIVEGPNFEF TETHEELLYD+EKLLENGDRWETEIAENLRSESLYR
Sbjct: 181 PVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 230
>ref|NP_173114.1| NADH:ubiquinone oxidoreductase, putative; protein id: At1g16700.1,
supported by cDNA: 1520., supported by cDNA:
gi_16649104, supported by cDNA: gi_20148604 [Arabidopsis
thaliana] gi|25282682|pir||C86302 probable
NADH-ubiquinone oxidoreductase [imported] - Arabidopsis
thaliana gi|9989050|gb|AAG10813.1|AC011808_1 Putative
NADH-ubiquinone oxidoreductase [Arabidopsis thaliana]
gi|16649105|gb|AAL24404.1| Putative NADH-ubiquinone
oxidoreductase [Arabidopsis thaliana]
gi|20148605|gb|AAM10193.1| putative NADH-ubiquinone
oxidoreductase [Arabidopsis thaliana]
gi|21553581|gb|AAM62674.1| NADH:ubiquinone
oxidoreductase, putative [Arabidopsis thaliana]
Length = 222
Score = 386 bits (991), Expect = e-106
Identities = 189/228 (82%), Positives = 204/228 (88%)
Frame = +1
Query: 4 MAAFLARKSLQALRTRQLAVAGQGLQSSQNYGMRLSAHSYATKHSFSNDKDDEEREKLAR 183
MA+ LAR+S ALR R LA +GQGLQ S G++ A SY + +KDDEE E+LA+
Sbjct: 1 MASLLARRSFSALRARHLAFSGQGLQGSHLCGLQSRAISYGS------NKDDEEAEQLAK 54
Query: 184 EISKDWSSVFERSINTLFLTELVRGLMLTLKYFFEQKVTINYPFEKGPLSPRFRGEHALR 363
EISKDWS+VFERS+NTLFLTE+VRGL LTLKYFF+ KVTINYPFEKGPLSPRFRGEHALR
Sbjct: 55 EISKDWSTVFERSMNTLFLTEMVRGLSLTLKYFFDPKVTINYPFEKGPLSPRFRGEHALR 114
Query: 364 RYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPV 543
RYPTGEERCIACKLCEA+CPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPV
Sbjct: 115 RYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPV 174
Query: 544 DAIVEGPNFEFVTETHEELLYDQEKLLENGDRWETEIAENLRSESLYR 687
DAIVEGPNFEF TETHEELLYD+EKLLENGDRWETEIAENLRSESLYR
Sbjct: 175 DAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 222
>ref|NP_178022.1| NADH dehydrogenase, putative; protein id: At1g79010.1, supported by
cDNA: 5465., supported by cDNA: gi_15081696, supported
by cDNA: gi_18252264 [Arabidopsis thaliana]
gi|3929364|sp|Q42599|NUIM_ARATH NADH-ubiquinone
oxidoreductase 23 kDa subunit, mitochondrial precursor
(Complex I-23KD) (CI-23KD) (Complex I-28.5KD)
(CI-28.5KD) gi|1076356|pir||S52380 NADH2 dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain TYKY precursor -
Arabidopsis thaliana gi|666977|emb|CAA59061.1| NADH
dehydrogenase; NADH:ubiquinone oxidoreductase (complex
I) [Arabidopsis thaliana] gi|3152573|gb|AAC17054.1|
Match to NADH:ubiquinone oxidoreductase gb|X84318 from
A.thaliana. ESTs gb|Z27005, gb|T04711, gb|T45078 and
gb|Z28689 come from this gene. [Arabidopsis thaliana]
gi|15081697|gb|AAK82503.1| At1g79010/YUP8H12R_21
[Arabidopsis thaliana] gi|18252265|gb|AAL62013.1|
At1g79010/YUP8H12R_21 [Arabidopsis thaliana]
gi|21593880|gb|AAM65847.1| NADH dehydrogenase, putative
[Arabidopsis thaliana]
Length = 222
Score = 377 bits (969), Expect = e-103
Identities = 185/228 (81%), Positives = 203/228 (88%)
Frame = +1
Query: 4 MAAFLARKSLQALRTRQLAVAGQGLQSSQNYGMRLSAHSYATKHSFSNDKDDEEREKLAR 183
MA+ LAR+SL LR R L ++GQ LQ S + RL + S+ ++KDDEE E+L++
Sbjct: 1 MASILARRSLNTLRARHLVLSGQALQGS--HLSRLQSRGI----SYGSNKDDEEAEQLSK 54
Query: 184 EISKDWSSVFERSINTLFLTELVRGLMLTLKYFFEQKVTINYPFEKGPLSPRFRGEHALR 363
EISKDW++VFERSINTLFLTE+VRGL LTLKYFF+ KVTINYPFEKGPLSPRFRGEHALR
Sbjct: 55 EISKDWNTVFERSINTLFLTEMVRGLSLTLKYFFDPKVTINYPFEKGPLSPRFRGEHALR 114
Query: 364 RYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPV 543
RYPTGEERCIACKLCEA+CPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPV
Sbjct: 115 RYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPV 174
Query: 544 DAIVEGPNFEFVTETHEELLYDQEKLLENGDRWETEIAENLRSESLYR 687
DAIVEGPNFEF TETHEELLYD+EKLLENGDRWETEIAENLRSESLYR
Sbjct: 175 DAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 222
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 782,749,886
Number of Sequences: 1393205
Number of extensions: 16526623
Number of successful extensions: 55144
Number of sequences better than 10.0: 1154
Number of HSP's better than 10.0 without gapping: 45911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52709
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 55187681368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
