Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011678A_C01 KMC011678A_c01
(519 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN72013.1| putative protein [Arabidopsis thaliana] 32 3.4
ref|NP_568776.1| myb family transcription factor; protein id: At... 32 3.4
ref|XP_222274.1| similar to hypothetical protein MGC10702 [Homo ... 32 3.4
ref|XP_149655.2| expressed sequence AI851327 [Mus musculus] 32 4.4
gb|AAH38606.1| Similar to hypothetical protein MGC10702 [Mus mus... 32 4.4
>gb|AAN72013.1| putative protein [Arabidopsis thaliana]
Length = 331
Score = 32.3 bits (72), Expect = 3.4
Identities = 13/19 (68%), Positives = 16/19 (83%)
Frame = -1
Query: 519 SPGFEDHRRLLASYEVEPE 463
SP FEDHRRLL+SY++ E
Sbjct: 292 SPDFEDHRRLLSSYDIGSE 310
>ref|NP_568776.1| myb family transcription factor; protein id: At5g52660.1, supported
by cDNA: 37702. [Arabidopsis thaliana]
gi|21593278|gb|AAM65227.1| contains similarity to
MYB-related DNA-binding protein [Arabidopsis thaliana]
Length = 330
Score = 32.3 bits (72), Expect = 3.4
Identities = 13/19 (68%), Positives = 16/19 (83%)
Frame = -1
Query: 519 SPGFEDHRRLLASYEVEPE 463
SP FEDHRRLL+SY++ E
Sbjct: 291 SPDFEDHRRLLSSYDIGSE 309
>ref|XP_222274.1| similar to hypothetical protein MGC10702 [Homo sapiens] [Rattus
norvegicus]
Length = 749
Score = 32.3 bits (72), Expect = 3.4
Identities = 13/43 (30%), Positives = 22/43 (50%)
Frame = +3
Query: 309 NLSLFSCRGILPHHAEMHEKQPILYSTSPPSK*HSSTAHHAWL 437
++ LF ++ HH +MH + Y SPPS + + + WL
Sbjct: 664 SMYLFRLMAVVVHHGDMHSGHFVTYRRSPPSAKNPLSTSNQWL 706
>ref|XP_149655.2| expressed sequence AI851327 [Mus musculus]
Length = 517
Score = 32.0 bits (71), Expect = 4.4
Identities = 13/40 (32%), Positives = 20/40 (49%)
Frame = +3
Query: 318 LFSCRGILPHHAEMHEKQPILYSTSPPSK*HSSTAHHAWL 437
LF ++ HH +MH + Y SPPS + + + WL
Sbjct: 435 LFRLMAVVVHHGDMHSGHFVTYRRSPPSAKNPLSTSNQWL 474
>gb|AAH38606.1| Similar to hypothetical protein MGC10702 [Mus musculus]
Length = 557
Score = 32.0 bits (71), Expect = 4.4
Identities = 13/40 (32%), Positives = 20/40 (49%)
Frame = +3
Query: 318 LFSCRGILPHHAEMHEKQPILYSTSPPSK*HSSTAHHAWL 437
LF ++ HH +MH + Y SPPS + + + WL
Sbjct: 475 LFRLMAVVVHHGDMHSGHFVTYRRSPPSAKNPLSTSNQWL 514
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 403,740,795
Number of Sequences: 1393205
Number of extensions: 7727450
Number of successful extensions: 14756
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 14475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14751
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
