Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011647A_C01 KMC011647A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565504.1| putative ubiquitin fusion-degradation protein; ... 266 1e-70
gb|AAM64897.1| putative ubiquitin fusion-degradation protein [Ar... 266 1e-70
pir||C84599 probable ubiquitin fusion-degradation protein [impor... 264 5e-70
pir||T06053 probable ubiquitin-dependent proteolytic protein - A... 253 9e-67
ref|NP_568048.1| putative ubiquitin-dependent proteolytic protei... 253 9e-67
>ref|NP_565504.1| putative ubiquitin fusion-degradation protein; protein id:
At2g21270.1, supported by cDNA: 34470. [Arabidopsis
thaliana] gi|20197912|gb|AAD23675.2| putative ubiquitin
fusion-degradation protein [Arabidopsis thaliana]
Length = 319
Score = 266 bits (680), Expect = 1e-70
Identities = 125/141 (88%), Positives = 133/141 (93%)
Frame = +1
Query: 145 MFFDGYGYHGTSFEQTYRCYPASFIEKPQLESGDKIIMPPSALDRLASLHIDYPMWFELR 324
MFFDGY YHGT+FEQ+YRCYPASFI+KPQLESGDKIIMPPSALDRLASLHIDYPM FELR
Sbjct: 1 MFFDGYHYHGTTFEQSYRCYPASFIDKPQLESGDKIIMPPSALDRLASLHIDYPMLFELR 60
Query: 325 NDDAERVSHCGVLEFIAEEGMIYMPYWMMENMLLQEGDIVRVKNVTLPKGKYVKLQPHTK 504
N ERV+HCGVLEFIAEEGMIYMPYWMM+N+LLQEGDIVRV+NVTLPKG YVKLQPHT
Sbjct: 61 NAGIERVTHCGVLEFIAEEGMIYMPYWMMQNLLLQEGDIVRVRNVTLPKGTYVKLQPHTT 120
Query: 505 DFLDISNPKAILETTLRNFSC 567
DFLDISNPKAILET LRN+SC
Sbjct: 121 DFLDISNPKAILETALRNYSC 141
>gb|AAM64897.1| putative ubiquitin fusion-degradation protein [Arabidopsis
thaliana]
Length = 319
Score = 266 bits (680), Expect = 1e-70
Identities = 125/141 (88%), Positives = 133/141 (93%)
Frame = +1
Query: 145 MFFDGYGYHGTSFEQTYRCYPASFIEKPQLESGDKIIMPPSALDRLASLHIDYPMWFELR 324
MFFDGY YHGT+FEQ+YRCYPASFI+KPQLESGDKIIMPPSALDRLASLHIDYPM FELR
Sbjct: 1 MFFDGYHYHGTTFEQSYRCYPASFIDKPQLESGDKIIMPPSALDRLASLHIDYPMLFELR 60
Query: 325 NDDAERVSHCGVLEFIAEEGMIYMPYWMMENMLLQEGDIVRVKNVTLPKGKYVKLQPHTK 504
N ERV+HCGVLEFIAEEGMIYMPYWMM+N+LLQEGDIVRV+NVTLPKG YVKLQPHT
Sbjct: 61 NAGIERVTHCGVLEFIAEEGMIYMPYWMMQNLLLQEGDIVRVRNVTLPKGTYVKLQPHTT 120
Query: 505 DFLDISNPKAILETTLRNFSC 567
DFLDISNPKAILET LRN+SC
Sbjct: 121 DFLDISNPKAILETALRNYSC 141
>pir||C84599 probable ubiquitin fusion-degradation protein [imported] -
Arabidopsis thaliana
Length = 320
Score = 264 bits (675), Expect = 5e-70
Identities = 124/140 (88%), Positives = 132/140 (93%)
Frame = +1
Query: 148 FFDGYGYHGTSFEQTYRCYPASFIEKPQLESGDKIIMPPSALDRLASLHIDYPMWFELRN 327
FFDGY YHGT+FEQ+YRCYPASFI+KPQLESGDKIIMPPSALDRLASLHIDYPM FELRN
Sbjct: 3 FFDGYHYHGTTFEQSYRCYPASFIDKPQLESGDKIIMPPSALDRLASLHIDYPMLFELRN 62
Query: 328 DDAERVSHCGVLEFIAEEGMIYMPYWMMENMLLQEGDIVRVKNVTLPKGKYVKLQPHTKD 507
ERV+HCGVLEFIAEEGMIYMPYWMM+N+LLQEGDIVRV+NVTLPKG YVKLQPHT D
Sbjct: 63 AGIERVTHCGVLEFIAEEGMIYMPYWMMQNLLLQEGDIVRVRNVTLPKGTYVKLQPHTTD 122
Query: 508 FLDISNPKAILETTLRNFSC 567
FLDISNPKAILET LRN+SC
Sbjct: 123 FLDISNPKAILETALRNYSC 142
>pir||T06053 probable ubiquitin-dependent proteolytic protein - Arabidopsis
thaliana gi|4539312|emb|CAB38813.1| putative
ubiquitin-dependent proteolytic protein [Arabidopsis
thaliana] gi|7270876|emb|CAB80556.1| putative
ubiquitin-dependent proteolytic protein [Arabidopsis
thaliana]
Length = 315
Score = 253 bits (647), Expect = 9e-67
Identities = 116/141 (82%), Positives = 130/141 (91%)
Frame = +1
Query: 145 MFFDGYGYHGTSFEQTYRCYPASFIEKPQLESGDKIIMPPSALDRLASLHIDYPMWFELR 324
MF+DGY YHGT+FEQTYRCYP+SFI+KPQ+ESGDKIIMPPSALDRLASL IDYPM FELR
Sbjct: 1 MFYDGYAYHGTTFEQTYRCYPSSFIDKPQIESGDKIIMPPSALDRLASLQIDYPMLFELR 60
Query: 325 NDDAERVSHCGVLEFIAEEGMIYMPYWMMENMLLQEGDIVRVKNVTLPKGKYVKLQPHTK 504
N + SHCGVLEFIAEEG+IY+PYWMM+N+LLQEGD+VRV+NVTLPKG YVKLQPHT
Sbjct: 61 NASTDSFSHCGVLEFIAEEGVIYIPYWMMQNLLLQEGDMVRVRNVTLPKGTYVKLQPHTT 120
Query: 505 DFLDISNPKAILETTLRNFSC 567
DFLDI+NPKAILET LRN+SC
Sbjct: 121 DFLDIANPKAILETALRNYSC 141
>ref|NP_568048.1| putative ubiquitin-dependent proteolytic protein; protein id:
At4g38930.1, supported by cDNA: gi_16930496 [Arabidopsis
thaliana] gi|16930497|gb|AAL31934.1|AF419602_1
AT4g38930/F19H22_30 [Arabidopsis thaliana]
gi|22135779|gb|AAM91046.1| AT4g38930/F19H22_30
[Arabidopsis thaliana]
Length = 311
Score = 253 bits (647), Expect = 9e-67
Identities = 116/141 (82%), Positives = 130/141 (91%)
Frame = +1
Query: 145 MFFDGYGYHGTSFEQTYRCYPASFIEKPQLESGDKIIMPPSALDRLASLHIDYPMWFELR 324
MF+DGY YHGT+FEQTYRCYP+SFI+KPQ+ESGDKIIMPPSALDRLASL IDYPM FELR
Sbjct: 1 MFYDGYAYHGTTFEQTYRCYPSSFIDKPQIESGDKIIMPPSALDRLASLQIDYPMLFELR 60
Query: 325 NDDAERVSHCGVLEFIAEEGMIYMPYWMMENMLLQEGDIVRVKNVTLPKGKYVKLQPHTK 504
N + SHCGVLEFIAEEG+IY+PYWMM+N+LLQEGD+VRV+NVTLPKG YVKLQPHT
Sbjct: 61 NASTDSFSHCGVLEFIAEEGVIYIPYWMMQNLLLQEGDMVRVRNVTLPKGTYVKLQPHTT 120
Query: 505 DFLDISNPKAILETTLRNFSC 567
DFLDI+NPKAILET LRN+SC
Sbjct: 121 DFLDIANPKAILETALRNYSC 141
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,064,040
Number of Sequences: 1393205
Number of extensions: 11807217
Number of successful extensions: 34290
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 31722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34129
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
