Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011630A_C01 KMC011630A_c01
(473 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAH03813.1| Unknown (protein for MGC:6139) [Mus musculus] 49 4e-05
sp|P08199|NUCL_MESAU Nucleolin (Protein C23) 48 5e-05
gb|AAA36966.1| nucleolin, C23 48 5e-05
gb|AAA36961.1| nucleolin 48 5e-05
pir||A27441 nucleolin - Chinese hamster 48 5e-05
>gb|AAH03813.1| Unknown (protein for MGC:6139) [Mus musculus]
Length = 327
Score = 48.5 bits (114), Expect = 4e-05
Identities = 29/67 (43%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Frame = -2
Query: 469 RNDSFRGRGNYGF----GGRSFGRVDYGNRAGDFGGRGRGPGGHGEGYQ---QGRGRGGS 311
R F GRG +G GG GR +G G FGG GRG GG G G++ G GRGG
Sbjct: 8 RGGGFGGRGGFGDRGGRGGGRGGRGGFGGGRGGFGGGGRGRGGGGGGFRGRGGGGGRGGG 67
Query: 310 ARFGATR 290
+ G R
Sbjct: 68 FQSGGNR 74
Score = 42.0 bits (97), Expect = 0.003
Identities = 25/49 (51%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -2
Query: 451 GRGNYGFGGRSFGRVDYGNRAGDFGGRGRGPG-GHGEGYQQG--RGRGG 314
GRG +G G FG G G G RGRG G G G G+Q G RGRGG
Sbjct: 30 GRGGFGGGRGGFGGGGRGRGGGGGGFRGRGGGGGRGGGFQSGGNRGRGG 78
Score = 33.1 bits (74), Expect = 1.5
Identities = 22/46 (47%), Positives = 24/46 (51%), Gaps = 4/46 (8%)
Frame = -2
Query: 451 GRGNYGFGGRSFGRVDYGNRAGDF---GGRGRGPGGHGE-GYQQGR 326
GRG G GG GR G R G F G RGRG G G+ G Q G+
Sbjct: 45 GRGRGGGGGGFRGRGGGGGRGGGFQSGGNRGRGGGRGGKRGNQSGK 90
Score = 32.0 bits (71), Expect = 3.4
Identities = 17/38 (44%), Positives = 20/38 (51%)
Frame = -2
Query: 403 YGNRAGDFGGRGRGPGGHGEGYQQGRGRGGSARFGATR 290
+ R G FGGR GG G+ +G GRGG FG R
Sbjct: 5 FSPRGGGFGGR----GGFGDRGGRGGGRGGRGGFGGGR 38
>sp|P08199|NUCL_MESAU Nucleolin (Protein C23)
Length = 714
Score = 48.1 bits (113), Expect = 5e-05
Identities = 26/47 (55%), Positives = 28/47 (59%)
Frame = -2
Query: 454 RGRGNYGFGGRSFGRVDYGNRAGDFGGRGRGPGGHGEGYQQGRGRGG 314
RG G GFGGR GR G G FGGRGRG G G++ GRG GG
Sbjct: 656 RGGGRGGFGGRGGGR---GGGRGGFGGRGRGGFGGRGGFRGGRGGGG 699
Score = 43.5 bits (101), Expect = 0.001
Identities = 27/58 (46%), Positives = 30/58 (51%)
Frame = -2
Query: 463 DSFRGRGNYGFGGRSFGRVDYGNRAGDFGGRGRGPGGHGEGYQQGRGRGGSARFGATR 290
D + +G GFGGR GR +G R G GRG G GG G GRGRGG G R
Sbjct: 643 DWAKPKGEGGFGGRGGGRGGFGGRGG---GRGGGRGGFG-----GRGRGGFGGRGGFR 692
Score = 38.9 bits (89), Expect = 0.028
Identities = 23/43 (53%), Positives = 26/43 (59%)
Frame = -2
Query: 454 RGRGNYGFGGRSFGRVDYGNRAGDFGGRGRGPGGHGEGYQQGR 326
RG G GFGGR GR +G R G GGRG G GG G+ QG+
Sbjct: 670 RGGGRGGFGGR--GRGGFGGRGGFRGGRG-GGGGGGDFKPQGK 709
>gb|AAA36966.1| nucleolin, C23
Length = 679
Score = 48.1 bits (113), Expect = 5e-05
Identities = 26/47 (55%), Positives = 28/47 (59%)
Frame = -2
Query: 454 RGRGNYGFGGRSFGRVDYGNRAGDFGGRGRGPGGHGEGYQQGRGRGG 314
RG G GFGGR GR G G FGGRGRG G G++ GRG GG
Sbjct: 621 RGGGRGGFGGRGGGR---GGGRGGFGGRGRGGFGGRGGFRGGRGGGG 664
Score = 43.5 bits (101), Expect = 0.001
Identities = 27/58 (46%), Positives = 30/58 (51%)
Frame = -2
Query: 463 DSFRGRGNYGFGGRSFGRVDYGNRAGDFGGRGRGPGGHGEGYQQGRGRGGSARFGATR 290
D + +G GFGGR GR +G R G GRG G GG G GRGRGG G R
Sbjct: 608 DWAKPKGEGGFGGRGGGRGGFGGRGG---GRGGGRGGFG-----GRGRGGFGGRGGFR 657
Score = 38.9 bits (89), Expect = 0.028
Identities = 23/43 (53%), Positives = 26/43 (59%)
Frame = -2
Query: 454 RGRGNYGFGGRSFGRVDYGNRAGDFGGRGRGPGGHGEGYQQGR 326
RG G GFGGR GR +G R G GGRG G GG G+ QG+
Sbjct: 635 RGGGRGGFGGR--GRGGFGGRGGFRGGRG-GGGGGGDFKPQGK 674
>gb|AAA36961.1| nucleolin
Length = 192
Score = 48.1 bits (113), Expect = 5e-05
Identities = 26/47 (55%), Positives = 28/47 (59%)
Frame = -2
Query: 454 RGRGNYGFGGRSFGRVDYGNRAGDFGGRGRGPGGHGEGYQQGRGRGG 314
RG G GFGGR GR G G FGGRGRG G G++ GRG GG
Sbjct: 134 RGGGRGGFGGRGGGR---GGGRGGFGGRGRGGFGGRGGFRGGRGGGG 177
Score = 43.5 bits (101), Expect = 0.001
Identities = 27/58 (46%), Positives = 30/58 (51%)
Frame = -2
Query: 463 DSFRGRGNYGFGGRSFGRVDYGNRAGDFGGRGRGPGGHGEGYQQGRGRGGSARFGATR 290
D + +G GFGGR GR +G R G GRG G GG G GRGRGG G R
Sbjct: 121 DWAKPKGEGGFGGRGGGRGGFGGRGG---GRGGGRGGFG-----GRGRGGFGGRGGFR 170
Score = 38.9 bits (89), Expect = 0.028
Identities = 23/43 (53%), Positives = 26/43 (59%)
Frame = -2
Query: 454 RGRGNYGFGGRSFGRVDYGNRAGDFGGRGRGPGGHGEGYQQGR 326
RG G GFGGR GR +G R G GGRG G GG G+ QG+
Sbjct: 148 RGGGRGGFGGR--GRGGFGGRGGFRGGRG-GGGGGGDFKPQGK 187
>pir||A27441 nucleolin - Chinese hamster
Length = 713
Score = 48.1 bits (113), Expect = 5e-05
Identities = 26/47 (55%), Positives = 28/47 (59%)
Frame = -2
Query: 454 RGRGNYGFGGRSFGRVDYGNRAGDFGGRGRGPGGHGEGYQQGRGRGG 314
RG G GFGGR GR G G FGGRGRG G G++ GRG GG
Sbjct: 655 RGGGRGGFGGRGGGR---GGGRGGFGGRGRGGFGGRGGFRGGRGGGG 698
Score = 43.5 bits (101), Expect = 0.001
Identities = 27/58 (46%), Positives = 30/58 (51%)
Frame = -2
Query: 463 DSFRGRGNYGFGGRSFGRVDYGNRAGDFGGRGRGPGGHGEGYQQGRGRGGSARFGATR 290
D + +G GFGGR GR +G R G GRG G GG G GRGRGG G R
Sbjct: 642 DWAKPKGEGGFGGRGGGRGGFGGRGG---GRGGGRGGFG-----GRGRGGFGGRGGFR 691
Score = 38.9 bits (89), Expect = 0.028
Identities = 23/43 (53%), Positives = 26/43 (59%)
Frame = -2
Query: 454 RGRGNYGFGGRSFGRVDYGNRAGDFGGRGRGPGGHGEGYQQGR 326
RG G GFGGR GR +G R G GGRG G GG G+ QG+
Sbjct: 669 RGGGRGGFGGR--GRGGFGGRGGFRGGRG-GGGGGGDFKPQGK 708
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 423,546,006
Number of Sequences: 1393205
Number of extensions: 10295081
Number of successful extensions: 107599
Number of sequences better than 10.0: 2482
Number of HSP's better than 10.0 without gapping: 53423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86435
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
