Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011627A_C01 KMC011627A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF28388.1|AF151217_1 proline-rich protein [Arabidopsis thali... 53 3e-06
gb|AAF64551.1|AF110988_1 proline-rich protein 4 [Arabidopsis tha... 53 3e-06
ref|NP_195588.1| extensin - like protein; protein id: At4g38770.... 53 3e-06
sp|Q38913|EXT1_ARATH Extensin 1 precursor (AtExt1) (AtExt4) gi|2... 40 0.023
pir||S71227 extensin 1 - Arabidopsis thaliana gi|1167961|gb|AAA8... 40 0.023
>gb|AAF28388.1|AF151217_1 proline-rich protein [Arabidopsis thaliana]
gi|21592385|gb|AAM64336.1| extensin-like protein
[Arabidopsis thaliana]
Length = 448
Score = 52.8 bits (125), Expect = 3e-06
Identities = 28/57 (49%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = -3
Query: 594 PPIKFFHHPTY----GKLPPLPHQRFFHHPSLGKLPPLPPTKFFHHPKFGKLPPLPP 436
PP+ + P PPLP P L K PPLPP K+ HHPKFGK PPLPP
Sbjct: 396 PPVPVYKPPVVVIPKKPCPPLPQL-----PPLPKFPPLPP-KYIHHPKFGKWPPLPP 446
>gb|AAF64551.1|AF110988_1 proline-rich protein 4 [Arabidopsis thaliana]
Length = 448
Score = 52.8 bits (125), Expect = 3e-06
Identities = 28/57 (49%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = -3
Query: 594 PPIKFFHHPTY----GKLPPLPHQRFFHHPSLGKLPPLPPTKFFHHPKFGKLPPLPP 436
PP+ + P PPLP P L K PPLPP K+ HHPKFGK PPLPP
Sbjct: 396 PPVPVYKPPVVVIPKKPCPPLPQL-----PPLPKFPPLPP-KYIHHPKFGKWPPLPP 446
>ref|NP_195588.1| extensin - like protein; protein id: At4g38770.1, supported by
cDNA: gi_15809889, supported by cDNA: gi_20260185,
supported by cDNA: gi_6782441 [Arabidopsis thaliana]
gi|7488231|pir||T06076 proline-rich protein GPP1 homolog
T9A14.50 - Arabidopsis thaliana
gi|4490329|emb|CAB38611.1| extensin-like protein
[Arabidopsis thaliana] gi|7270860|emb|CAB80540.1|
extensin-like protein [Arabidopsis thaliana]
gi|15809890|gb|AAL06873.1| AT4g38770/T9A14_50
[Arabidopsis thaliana] gi|20260186|gb|AAM12991.1|
extensin-like protein [Arabidopsis thaliana]
gi|24030361|gb|AAN41344.1| putative extensin protein
[Arabidopsis thaliana] gi|24899753|gb|AAN65091.1|
extensin-like protein [Arabidopsis thaliana]
Length = 448
Score = 52.8 bits (125), Expect = 3e-06
Identities = 28/57 (49%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = -3
Query: 594 PPIKFFHHPTY----GKLPPLPHQRFFHHPSLGKLPPLPPTKFFHHPKFGKLPPLPP 436
PP+ + P PPLP P L K PPLPP K+ HHPKFGK PPLPP
Sbjct: 396 PPVPVYKPPVVVIPKKPCPPLPQL-----PPLPKFPPLPP-KYIHHPKFGKWPPLPP 446
>sp|Q38913|EXT1_ARATH Extensin 1 precursor (AtExt1) (AtExt4) gi|25307716|pir||B96798
extensin [imported] - Arabidopsis thaliana
gi|2829922|gb|AAC00630.1| extensin [Arabidopsis
thaliana]
Length = 373
Score = 40.0 bits (92), Expect = 0.023
Identities = 22/54 (40%), Positives = 30/54 (54%)
Frame = -3
Query: 594 PPIKFFHHPTYGKLPPLPHQRFFHHPSLGKLPPLPPTKFFHHPKFGKLPPLPPV 433
PP+K++ P K PP P + + P + K PP PP K++ P K PP PPV
Sbjct: 196 PPVKYYSPPPVYKSPP-PPVKHYSPPPVYKSPP-PPVKYYSPPPVYKSPP-PPV 246
Score = 40.0 bits (92), Expect = 0.023
Identities = 22/54 (40%), Positives = 30/54 (54%)
Frame = -3
Query: 594 PPIKFFHHPTYGKLPPLPHQRFFHHPSLGKLPPLPPTKFFHHPKFGKLPPLPPV 433
PP+K++ P K PP P + + P + K PP PP K++ P K PP PPV
Sbjct: 164 PPVKYYSPPPVYKSPP-PPVKHYSPPPVYKSPP-PPVKYYSPPPVYKSPP-PPV 214
Score = 38.5 bits (88), Expect = 0.066
Identities = 22/54 (40%), Positives = 29/54 (52%)
Frame = -3
Query: 594 PPIKFFHHPTYGKLPPLPHQRFFHHPSLGKLPPLPPTKFFHHPKFGKLPPLPPV 433
PP+K + P K PP P + + P + K PP PP K++ P K PP PPV
Sbjct: 44 PPVKHYSPPPVYKSPP-PPVKHYSPPPVYKSPP-PPVKYYSPPPVYKSPP-PPV 94
Score = 38.5 bits (88), Expect = 0.066
Identities = 22/54 (40%), Positives = 29/54 (52%)
Frame = -3
Query: 594 PPIKFFHHPTYGKLPPLPHQRFFHHPSLGKLPPLPPTKFFHHPKFGKLPPLPPV 433
PP+K + P K PP P + + P + K PP PP K++ P K PP PPV
Sbjct: 132 PPVKHYSPPPVYKSPP-PPVKHYSPPPVYKSPP-PPVKYYSPPPVYKSPP-PPV 182
Score = 37.0 bits (84), Expect = 0.19
Identities = 22/54 (40%), Positives = 28/54 (51%)
Frame = -3
Query: 594 PPIKFFHHPTYGKLPPLPHQRFFHHPSLGKLPPLPPTKFFHHPKFGKLPPLPPV 433
PP+K + P K PP P + + P + K PP PP K + P K PP PPV
Sbjct: 28 PPVKHYSPPPVYKSPP-PPVKHYSPPPVYKSPP-PPVKHYSPPPVYKSPP-PPV 78
Score = 37.0 bits (84), Expect = 0.19
Identities = 22/54 (40%), Positives = 28/54 (51%)
Frame = -3
Query: 594 PPIKFFHHPTYGKLPPLPHQRFFHHPSLGKLPPLPPTKFFHHPKFGKLPPLPPV 433
PP+K + P K PP P + + P + K PP PP K + P K PP PPV
Sbjct: 100 PPVKHYSPPPVYKSPP-PPVKHYSPPPVYKSPP-PPVKHYSPPPVYKSPP-PPV 150
Score = 35.0 bits (79), Expect = 0.73
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Frame = -3
Query: 594 PPIKFFHHPTYGKLPPLPHQRFFHHPSLGKLPPLP-------PTKFFHHPKFGKLPPLPP 436
PP+K + P K PP P +++ P + K PP P P K + P K PP PP
Sbjct: 60 PPVKHYSPPPVYKSPP-PPVKYYSPPPVYKSPPPPVYKSPPPPVKHYSPPPVYKSPP-PP 117
Query: 435 V 433
V
Sbjct: 118 V 118
>pir||S71227 extensin 1 - Arabidopsis thaliana gi|1167961|gb|AAA85899.1|
extensin
Length = 284
Score = 40.0 bits (92), Expect = 0.023
Identities = 22/54 (40%), Positives = 30/54 (54%)
Frame = -3
Query: 594 PPIKFFHHPTYGKLPPLPHQRFFHHPSLGKLPPLPPTKFFHHPKFGKLPPLPPV 433
PP+K++ P K PP P + + P + K PP PP K++ P K PP PPV
Sbjct: 108 PPVKYYSPPPVYKSPP-PPVKHYSPPPVYKSPP-PPVKYYSPPPVYKSPP-PPV 158
Score = 39.7 bits (91), Expect = 0.030
Identities = 23/54 (42%), Positives = 29/54 (53%)
Frame = -3
Query: 594 PPIKFFHHPTYGKLPPLPHQRFFHHPSLGKLPPLPPTKFFHHPKFGKLPPLPPV 433
PP+K + P K PP P R++ P + K PP PP K + P K PP PPV
Sbjct: 60 PPVKHYSPPPVYKSPP-PPVRYYSPPPVYKSPP-PPVKHYSPPPVYKSPP-PPV 110
Score = 38.9 bits (89), Expect = 0.050
Identities = 21/54 (38%), Positives = 30/54 (54%)
Frame = -3
Query: 594 PPIKFFHHPTYGKLPPLPHQRFFHHPSLGKLPPLPPTKFFHHPKFGKLPPLPPV 433
PP++++ P K PP P + + P + K PP PP K++ P K PP PPV
Sbjct: 76 PPVRYYSPPPVYKSPP-PPVKHYSPPPVYKSPP-PPVKYYSPPPVYKSPP-PPV 126
Score = 37.0 bits (84), Expect = 0.19
Identities = 22/54 (40%), Positives = 28/54 (51%)
Frame = -3
Query: 594 PPIKFFHHPTYGKLPPLPHQRFFHHPSLGKLPPLPPTKFFHHPKFGKLPPLPPV 433
PP+K + P K PP P + + P + K PP PP K + P K PP PPV
Sbjct: 28 PPVKHYSPPPVYKSPP-PPVKHYSPPPVYKSPP-PPVKHYSPPPVYKSPP-PPV 78
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 550,515,817
Number of Sequences: 1393205
Number of extensions: 13183993
Number of successful extensions: 38571
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 34000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37820
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
