Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011625A_C01 KMC011625A_c01
(641 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB86225.1| putative hydroxymethyltransferase [Oryza sativa ... 85 7e-16
ref|NP_173621.1| glycine hydroxymethyltransferase, putative; pro... 78 9e-14
pir||F86484 probable hydroxymethyltransferase, 49598-47322 [impo... 73 3e-12
gb|AAM61506.1| putative hydroxymethyltransferase [Arabidopsis th... 73 3e-12
ref|NP_564473.1| putative hydroxymethyltransferase; protein id: ... 73 3e-12
>dbj|BAB86225.1| putative hydroxymethyltransferase [Oryza sativa (japonica
cultivar-group)] gi|20804756|dbj|BAB92441.1| putative
hydroxymethyltransferase [Oryza sativa (japonica
cultivar-group)]
Length = 600
Score = 85.1 bits (209), Expect = 7e-16
Identities = 52/106 (49%), Positives = 65/106 (61%), Gaps = 5/106 (4%)
Frame = -3
Query: 636 KVCETFHITINQCAIYG---FISSGQVRIGSPAMTTRGCLEDDFETIADFLEGS*DYQAL 466
KVCE HI+IN+ IYG IS G VRIG+PAMTTRGCLEDDFE IADFL + +
Sbjct: 498 KVCEACHISINKMPIYGDNGSISPGGVRIGTPAMTTRGCLEDDFEVIADFLIRATQIASN 557
Query: 465 YRGNTGNHARSFSRVFRTIK--IFRSSEIVLSETFSSQFAMPGFNI 334
G + F R + K I +++ E F+SQFAMPGF++
Sbjct: 558 LMKEHGKMQKEFLRGLQNNKDIIELRNQV---ENFASQFAMPGFDV 600
>ref|NP_173621.1| glycine hydroxymethyltransferase, putative; protein id: At1g22020.1
[Arabidopsis thaliana]
gi|9280677|gb|AAF86546.1|AC069252_5 F2E2.7 [Arabidopsis
thaliana] gi|21928157|gb|AAM78106.1| At1g22020/F2E2_3
[Arabidopsis thaliana] gi|28416495|gb|AAO42778.1|
At1g22020/F2E2_3 [Arabidopsis thaliana]
Length = 599
Score = 78.2 bits (191), Expect = 9e-14
Identities = 48/108 (44%), Positives = 62/108 (56%), Gaps = 7/108 (6%)
Frame = -3
Query: 636 KVCETFHITINQCAIY---GFISSGQVRIGSPAMTTRGCLEDDFETIADFLEGS*DYQAL 466
KVCE HIT+N+ AI+ G IS G VRIGSPAMT+RGCLE +FET+ADFL Y+A
Sbjct: 497 KVCEMCHITVNKVAIFSENGVISPGGVRIGSPAMTSRGCLEPEFETMADFL-----YRAA 551
Query: 465 YRGNTGNHARSFSRVFRTIKIFRSSEIV----LSETFSSQFAMPGFNI 334
+ + I+ EI E F++QFAMP F++
Sbjct: 552 QIASAAQREHGKLQKEPLKSIYHCKEIADLRNQVEAFATQFAMPAFDM 599
>pir||F86484 probable hydroxymethyltransferase, 49598-47322 [imported] -
Arabidopsis thaliana
gi|12324475|gb|AAG52195.1|AC021199_1 putative
hydroxymethyltransferase; 49598-47322 [Arabidopsis
thaliana]
Length = 578
Score = 73.2 bits (178), Expect = 3e-12
Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Frame = -3
Query: 636 KVCETFHITINQCAIYG---FISSGQVRIGSPAMTTRGCLEDDFETIADFLEGS*DYQAL 466
KVCE HIT+N+ AI+G IS G VRIG+PAMTTRGC+E DFET+ADFL + +
Sbjct: 473 KVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTTRGCIESDFETMADFLIKAAQITSA 532
Query: 465 YRGNTGNHARSFSRVFRTIKIFRSSEIVLSETFSSQFAMP 346
+ G + F + T K + E F+ Q+ MP
Sbjct: 533 LQREHGKSHKEFVKSLCTNKDIAELRNRV-EAFALQYEMP 571
>gb|AAM61506.1| putative hydroxymethyltransferase [Arabidopsis thaliana]
Length = 578
Score = 73.2 bits (178), Expect = 3e-12
Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Frame = -3
Query: 636 KVCETFHITINQCAIYG---FISSGQVRIGSPAMTTRGCLEDDFETIADFLEGS*DYQAL 466
KVCE HIT+N+ AI+G IS G VRIG+PAMTTRGC+E DFET+ADFL + +
Sbjct: 473 KVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTTRGCIESDFETMADFLIKAAQITSA 532
Query: 465 YRGNTGNHARSFSRVFRTIKIFRSSEIVLSETFSSQFAMP 346
+ G + F + T K + E F+ Q+ MP
Sbjct: 533 LQREHGKSHKEFVKSLCTNKDIAELRNRV-EAFALQYEMP 571
>ref|NP_564473.1| putative hydroxymethyltransferase; protein id: At1g36370.1,
supported by cDNA: 122515. [Arabidopsis thaliana]
gi|27754227|gb|AAO22567.1| putative
hydroxymethyltransferase [Arabidopsis thaliana]
Length = 598
Score = 73.2 bits (178), Expect = 3e-12
Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Frame = -3
Query: 636 KVCETFHITINQCAIYG---FISSGQVRIGSPAMTTRGCLEDDFETIADFLEGS*DYQAL 466
KVCE HIT+N+ AI+G IS G VRIG+PAMTTRGC+E DFET+ADFL + +
Sbjct: 493 KVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTTRGCIESDFETMADFLIKAAQITSA 552
Query: 465 YRGNTGNHARSFSRVFRTIKIFRSSEIVLSETFSSQFAMP 346
+ G + F + T K + E F+ Q+ MP
Sbjct: 553 LQREHGKSHKEFVKSLCTNKDIAELRNRV-EAFALQYEMP 591
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,868,319
Number of Sequences: 1393205
Number of extensions: 9498368
Number of successful extensions: 18658
Number of sequences better than 10.0: 145
Number of HSP's better than 10.0 without gapping: 18274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18630
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
