Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011621A_C01 KMC011621A_c01
(480 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565778.1| expressed protein; protein id: At2g34050.1, sup... 145 8e-38
gb|AAM64393.1| unknown [Arabidopsis thaliana] 145 8e-38
pir||G84751 hypothetical protein At2g34050 [imported] - Arabidop... 138 7e-36
gb|EAA34986.1| hypothetical protein [Neurospora crassa] 54 1e-06
gb|AAG51444.1|AC008153_17 unknown protein; 82436-88041 [Arabidop... 34 0.94
>ref|NP_565778.1| expressed protein; protein id: At2g34050.1, supported by cDNA:
23892., supported by cDNA: gi_15450477 [Arabidopsis
thaliana] gi|15450478|gb|AAK96532.1| At2g34050/T14G11.17
[Arabidopsis thaliana] gi|20196905|gb|AAB67623.2|
expressed protein [Arabidopsis thaliana]
gi|24797040|gb|AAN64532.1| At2g34050/T14G11.17
[Arabidopsis thaliana]
Length = 248
Score = 145 bits (365), Expect(2) = 8e-38
Identities = 66/87 (75%), Positives = 78/87 (88%)
Frame = -1
Query: 480 SMFVQAQAPHMIFTGLEDYKARGTQASPYFTVTFYTEFAESKDLVLIRGDVVFTSQLTDS 301
+MF Q +APHMIFTGLEDYKARGTQA+PY T TFYTE +E+KDLV IRGDVVFTS+LTD
Sbjct: 143 TMFAQVEAPHMIFTGLEDYKARGTQAAPYLTTTFYTELSETKDLVFIRGDVVFTSKLTDE 202
Query: 300 EAKWLLDTAQSFYLNDVRYQLVERFKQ 220
EAKW+++TAQSFYLND RY+L+ERF +
Sbjct: 203 EAKWIMETAQSFYLNDSRYKLLERFNK 229
Score = 33.1 bits (74), Expect(2) = 8e-38
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = -2
Query: 239 LLRGSSRPTREFEFKDVLLALDMPI 165
LL ++ T +FEFKDVL ALDMP+
Sbjct: 223 LLERFNKHTHDFEFKDVLQALDMPL 247
>gb|AAM64393.1| unknown [Arabidopsis thaliana]
Length = 248
Score = 145 bits (365), Expect(2) = 8e-38
Identities = 66/87 (75%), Positives = 78/87 (88%)
Frame = -1
Query: 480 SMFVQAQAPHMIFTGLEDYKARGTQASPYFTVTFYTEFAESKDLVLIRGDVVFTSQLTDS 301
+MF Q +APHMIFTGLEDYKARGTQA+PY T TFYTE +E+KDLV IRGDVVFTS+LTD
Sbjct: 143 TMFAQVEAPHMIFTGLEDYKARGTQAAPYLTTTFYTELSETKDLVFIRGDVVFTSKLTDE 202
Query: 300 EAKWLLDTAQSFYLNDVRYQLVERFKQ 220
EAKW+++TAQSFYLND RY+L+ERF +
Sbjct: 203 EAKWIMETAQSFYLNDSRYKLLERFNK 229
Score = 33.1 bits (74), Expect(2) = 8e-38
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = -2
Query: 239 LLRGSSRPTREFEFKDVLLALDMPI 165
LL ++ T +FEFKDVL ALDMP+
Sbjct: 223 LLERFNKHTHDFEFKDVLQALDMPL 247
>pir||G84751 hypothetical protein At2g34050 [imported] - Arabidopsis thaliana
Length = 210
Score = 138 bits (348), Expect(2) = 7e-36
Identities = 63/81 (77%), Positives = 74/81 (90%)
Frame = -1
Query: 462 QAPHMIFTGLEDYKARGTQASPYFTVTFYTEFAESKDLVLIRGDVVFTSQLTDSEAKWLL 283
+APHMIFTGLEDYKARGTQA+PY T TFYTE +E+KDLV IRGDVVFTS+LTD EAKW++
Sbjct: 111 EAPHMIFTGLEDYKARGTQAAPYLTTTFYTELSETKDLVFIRGDVVFTSKLTDEEAKWIM 170
Query: 282 DTAQSFYLNDVRYQLVERFKQ 220
+TAQSFYLND RY+L+ERF +
Sbjct: 171 ETAQSFYLNDSRYKLLERFNK 191
Score = 33.1 bits (74), Expect(2) = 7e-36
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = -2
Query: 239 LLRGSSRPTREFEFKDVLLALDMPI 165
LL ++ T +FEFKDVL ALDMP+
Sbjct: 185 LLERFNKHTHDFEFKDVLQALDMPL 209
>gb|EAA34986.1| hypothetical protein [Neurospora crassa]
Length = 341
Score = 53.5 bits (127), Expect = 1e-06
Identities = 26/63 (41%), Positives = 39/63 (61%)
Frame = -1
Query: 450 MIFTGLEDYKARGTQASPYFTVTFYTEFAESKDLVLIRGDVVFTSQLTDSEAKWLLDTAQ 271
++FT L +YK RG A P+ TVT Y +F+ K +VL++G V+ + +A+WLL Q
Sbjct: 234 VLFTQLAEYKNRGEFAQPHTTVTHYMDFSVDKGVVLMQGQVMEDRGVKPEDAQWLLMCLQ 293
Query: 270 SFY 262
FY
Sbjct: 294 RFY 296
>gb|AAG51444.1|AC008153_17 unknown protein; 82436-88041 [Arabidopsis thaliana]
Length = 797
Score = 33.9 bits (76), Expect = 0.94
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Frame = +1
Query: 31 EIIVESSVQQTNKQKRIGQQKMKRNLSILKAIN*FKICLIKNG*KIGMSKASKTSLNSNS 210
E+I + Q Q+ I ++K+ L+ ++I + L G I + +++++ L +N
Sbjct: 321 EVIFWVDLIQKQLQRAIDREKIWSKLTTSESIEVLERDLAIFGFFIALGRSTQSILAANG 380
Query: 211 RVGLLEPLNKLVPHII--------QIKRLSSIQKPFGL*VSQLAGEYNIPADKYQVLALC 366
L PL LV H+I Q+ +SS Q L V P + V A
Sbjct: 381 FDSLENPLEDLVRHLIGGSVLYYPQLSAISSYQ----LYVESFIKYSKWPENPSNVKA-A 435
Query: 367 KFCVKGHSKVGRCLCSSGLV 426
KF KGH + RC G++
Sbjct: 436 KFLSKGHKTLVRCKEELGIL 455
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 388,000,866
Number of Sequences: 1393205
Number of extensions: 7573761
Number of successful extensions: 18353
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18350
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
