Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011618A_C01 KMC011618A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL31080.1|AC091749_9 unknown protein [Oryza sativa] gi|22655... 129 2e-29
ref|NP_566847.1| chloroplast lumen common protein family; protei... 125 4e-28
ref|NP_174638.2| chloroplast lumen common protein family; protei... 73 2e-12
pir||C86461 F14M2.10 protein - Arabidopsis thaliana gi|9665092|g... 73 2e-12
dbj|BAB90167.1| P0408G07.13 [Oryza sativa (japonica cultivar-gro... 52 5e-06
>gb|AAL31080.1|AC091749_9 unknown protein [Oryza sativa] gi|22655742|gb|AAN04159.1| Unknown
protein [Oryza sativa (japonica cultivar-group)]
Length = 296
Score = 129 bits (324), Expect = 2e-29
Identities = 56/85 (65%), Positives = 72/85 (83%)
Frame = -3
Query: 535 MKGLYYGAKESVGCASEMVKRDVVGLGDFRFFDGYCGWEKEPLKDEIRAGYWTVAACSPS 356
M G++YG +ESVGCA+E+VKR VVG+ DFRFFDG+CGWE+E L+DE+RAG W VAACSP+
Sbjct: 211 MPGVHYGTRESVGCAAELVKRGVVGVRDFRFFDGFCGWEREQLRDEVRAGLWRVAACSPA 270
Query: 355 VVGLGSVGSVGLWDEVLGLMGRRKV 281
V+GL +V GLW+EV GL+G R+V
Sbjct: 271 VLGLATVVKGGLWEEVQGLVGERRV 295
>ref|NP_566847.1| chloroplast lumen common protein family; protein id: At3g29240.1,
supported by cDNA: 121435., supported by cDNA:
gi_19310483 [Arabidopsis thaliana]
gi|9293917|dbj|BAB01820.1|
emb|CAB72194.1~gene_id:MXO21.9~similar to unknown
protein [Arabidopsis thaliana]
gi|19310484|gb|AAL84976.1| AT3g29240/MXO21_9
[Arabidopsis thaliana] gi|21537141|gb|AAM61482.1|
unknown [Arabidopsis thaliana]
gi|22654969|gb|AAM98077.1| AT3g29240/MXO21_9
[Arabidopsis thaliana] gi|28416521|gb|AAO42791.1|
AT3g29240/MXO21_9 [Arabidopsis thaliana]
Length = 317
Score = 125 bits (313), Expect = 4e-28
Identities = 61/82 (74%), Positives = 68/82 (82%), Gaps = 1/82 (1%)
Frame = -3
Query: 535 MKGLYYGAKESVGCASEMVKRDVVGLGDFRFFDGYCGWEKEPLKDEIRAGYWTVAACSPS 356
MKGLYYG +ESVG A+EMVKR++VG + RFFDGYCGWEKE LK EI GYWTVAACS +
Sbjct: 229 MKGLYYGTRESVGLAAEMVKRNLVGRSELRFFDGYCGWEKEQLKAEILGGYWTVAACSST 288
Query: 355 VVGLGS-VGSVGLWDEVLGLMG 293
VV LGS V S GLWDEVLGL+G
Sbjct: 289 VVELGSAVQSHGLWDEVLGLIG 310
>ref|NP_174638.2| chloroplast lumen common protein family; protein id: At1g33780.1,
supported by cDNA: gi_17065471, supported by cDNA:
gi_20148514 [Arabidopsis thaliana]
gi|17065472|gb|AAL32890.1| Unknown protein [Arabidopsis
thaliana] gi|20148515|gb|AAM10148.1| unknown protein
[Arabidopsis thaliana]
Length = 325
Score = 73.2 bits (178), Expect = 2e-12
Identities = 35/81 (43%), Positives = 52/81 (63%)
Frame = -3
Query: 535 MKGLYYGAKESVGCASEMVKRDVVGLGDFRFFDGYCGWEKEPLKDEIRAGYWTVAACSPS 356
M GL +G + S+ A+ +VK+ V+ +FRFF GY GW+ + L++EI + YW VAACS
Sbjct: 233 MPGLNFGTRNSLDEAAVLVKKGVLKPQEFRFFVGYAGWQLDQLREEIESDYWHVAACSSD 292
Query: 355 VVGLGSVGSVGLWDEVLGLMG 293
++ S LW+E+L LMG
Sbjct: 293 LI--CGASSENLWEEILQLMG 311
>pir||C86461 F14M2.10 protein - Arabidopsis thaliana
gi|9665092|gb|AAF97283.1|AC010164_5 Unknown protein
[Arabidopsis thaliana]
Length = 341
Score = 73.2 bits (178), Expect = 2e-12
Identities = 35/81 (43%), Positives = 52/81 (63%)
Frame = -3
Query: 535 MKGLYYGAKESVGCASEMVKRDVVGLGDFRFFDGYCGWEKEPLKDEIRAGYWTVAACSPS 356
M GL +G + S+ A+ +VK+ V+ +FRFF GY GW+ + L++EI + YW VAACS
Sbjct: 249 MPGLNFGTRNSLDEAAVLVKKGVLKPQEFRFFVGYAGWQLDQLREEIESDYWHVAACSSD 308
Query: 355 VVGLGSVGSVGLWDEVLGLMG 293
++ S LW+E+L LMG
Sbjct: 309 LI--CGASSENLWEEILQLMG 327
>dbj|BAB90167.1| P0408G07.13 [Oryza sativa (japonica cultivar-group)]
gi|21328042|dbj|BAC00627.1| P0434C04.2 [Oryza sativa
(japonica cultivar-group)]
Length = 354
Score = 52.0 bits (123), Expect = 5e-06
Identities = 27/80 (33%), Positives = 41/80 (50%), Gaps = 1/80 (1%)
Frame = -3
Query: 529 GLYYGAKESVGCASEMVKRDVVGLGDFRFFDGYCGWEKEPLKDEIRAGYWTVAACSPSVV 350
G+ +G + + AS ++K V D F+ GY W+ + L EI GYW V +CS ++
Sbjct: 260 GVCFGFRTDLEKASALLKSGAVKPEDLNFYVGYSAWDYDQLLSEIDQGYWHVTSCSSGLI 319
Query: 349 GLG-SVGSVGLWDEVLGLMG 293
+ LW E+L LMG
Sbjct: 320 SDSLATDPSCLWTEILKLMG 339
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 535,967,383
Number of Sequences: 1393205
Number of extensions: 13790879
Number of successful extensions: 52571
Number of sequences better than 10.0: 295
Number of HSP's better than 10.0 without gapping: 46157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51492
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
