Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011601A_C01 KMC011601A_c01
(494 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB62625.1| hypothetical protein~similar to Arabidopsis thal... 67 1e-19
ref|NP_200196.1| putative protein; protein id: At5g53850.1 [Arab... 64 2e-19
ref|NP_505997.1| Haloacid dehalogenase-like hydrolase [Caenorhab... 35 5e-05
ref|NP_067027.1| E-1 enzyme [Homo sapiens] gi|6523813|gb|AAF1486... 34 8e-04
ref|NP_649523.1| CG12173-PA [Drosophila melanogaster] gi|2317043... 33 8e-04
>dbj|BAB62625.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 3,
F28J7.34 [Oryza sativa (japonica cultivar-group)]
gi|15408849|dbj|BAB64238.1| P0672D08.11 [Oryza sativa
(japonica cultivar-group)] gi|20804430|dbj|BAB92127.1|
hypothetical protein~similar to Arabidopsis thaliana
chromosome 3, F28J7.34 [Oryza sativa (japonica
cultivar-group)]
Length = 1122
Score = 66.6 bits (161), Expect(2) = 1e-19
Identities = 30/40 (75%), Positives = 34/40 (85%)
Frame = -1
Query: 383 FKKPTAAKAAGLEVIISIRPGNGPLPDNHGFETITSFLEI 264
+++ AAK AGLEVIIS+RPGN PLPDNHGF TITSF EI
Sbjct: 1081 YQEAAAAKTAGLEVIISVRPGNAPLPDNHGFHTITSFAEI 1120
Score = 50.8 bits (120), Expect(2) = 1e-19
Identities = 24/40 (60%), Positives = 29/40 (72%)
Frame = -3
Query: 492 FVDTAVGYGRETRSYVEISQSLGVDKSSDILFVTDVFQEA 373
F DT +G RE SY EI Q+LG D+ S ILF+TDV+QEA
Sbjct: 1045 FFDTTIGAKREVSSYYEIWQTLGTDRPSQILFLTDVYQEA 1084
>ref|NP_200196.1| putative protein; protein id: At5g53850.1 [Arabidopsis thaliana]
gi|10177247|dbj|BAB10715.1| contains similarity to
enolase-phosphatase~gene_id:K19P17.1 [Arabidopsis
thaliana]
Length = 507
Score = 63.9 bits (154), Expect(2) = 2e-19
Identities = 28/40 (70%), Positives = 35/40 (87%)
Frame = -1
Query: 383 FKKPTAAKAAGLEVIISIRPGNGPLPDNHGFETITSFLEI 264
+++ AAKAAGLE IISIRPGN PLP+NHGF+T+TSF +I
Sbjct: 468 YQEAVAAKAAGLEAIISIRPGNAPLPENHGFKTVTSFSQI 507
Score = 52.4 bits (124), Expect(2) = 2e-19
Identities = 23/40 (57%), Positives = 32/40 (79%)
Frame = -3
Query: 492 FVDTAVGYGRETRSYVEISQSLGVDKSSDILFVTDVFQEA 373
F DT +G +E+RSY EI ++LGVD ++I+FVTDV+QEA
Sbjct: 432 FFDTTIGNKKESRSYKEIKETLGVDDPAEIMFVTDVYQEA 471
>ref|NP_505997.1| Haloacid dehalogenase-like hydrolase [Caenorhabditis elegans]
gi|7504688|pir||T22954 hypothetical protein F58H1.3 -
Caenorhabditis elegans gi|3877894|emb|CAB00106.1|
Hypothetical protein F58H1.3 [Caenorhabditis elegans]
Length = 508
Score = 35.4 bits (80), Expect(2) = 5e-05
Identities = 28/79 (35%), Positives = 38/79 (47%), Gaps = 9/79 (11%)
Frame = -1
Query: 368 AAKAAGLEVIISIRPGNGPLPDN--HGFETITSFLEI*EQLHSSGMTLTMFCYLRQLIL- 198
AAK AGL+ + +RPGN L + + TI +FL I M + F L Q L
Sbjct: 227 AAKKAGLQTKLVVRPGNAGLTQEAINAYGTIETFLNIQNSEFEFRMIIRCFQNLNQSSLH 286
Query: 197 -----CTT-PSHSIFTLLK 159
CT+ PS S+F +K
Sbjct: 287 LYRGICTSRPSSSVFDKIK 305
Score = 32.3 bits (72), Expect(2) = 5e-05
Identities = 17/40 (42%), Positives = 26/40 (64%)
Frame = -3
Query: 492 FVDTAVGYGRETRSYVEISQSLGVDKSSDILFVTDVFQEA 373
+ DT +G E+ SY +IS+ + + S +ILF+TDV EA
Sbjct: 187 YFDTNIGLKGESNSYTKISERIKIPPS-EILFLTDVEAEA 225
>ref|NP_067027.1| E-1 enzyme [Homo sapiens] gi|6523813|gb|AAF14866.1|AF113125_1 E-1
enzyme [Homo sapiens] gi|10434177|dbj|BAB14160.1|
unnamed protein product [Homo sapiens]
Length = 261
Score = 33.9 bits (76), Expect(2) = 8e-04
Identities = 17/38 (44%), Positives = 28/38 (72%)
Frame = -3
Query: 486 DTAVGYGRETRSYVEISQSLGVDKSSDILFVTDVFQEA 373
DT +G+ E+ SY +I+ S+G +++ILF+TDV +EA
Sbjct: 181 DTKIGHKVESESYRKIADSIGCS-TNNILFLTDVTREA 217
Score = 29.6 bits (65), Expect(2) = 8e-04
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -1
Query: 380 KKPTAAKAAGLEVIISIRPGNGPLPDNHG--FETITSFLEI 264
++ +AA+ A + V + +RPGN L D+ + ITSF E+
Sbjct: 215 REASAAEEADVHVAVVVRPGNAGLTDDEKTYYSLITSFSEL 255
>ref|NP_649523.1| CG12173-PA [Drosophila melanogaster] gi|23170430|gb|AAF52053.2|
CG12173-PA [Drosophila melanogaster]
Length = 256
Score = 33.1 bits (74), Expect(2) = 8e-04
Identities = 18/34 (52%), Positives = 21/34 (60%), Gaps = 2/34 (5%)
Frame = -1
Query: 368 AAKAAGLEVIISIRPGNGPLPDNH--GFETITSF 273
AA+ AGL+ II RPGN L D+ GFE I F
Sbjct: 208 AARCAGLQAIILKRPGNAALADDQKTGFELIPDF 241
Score = 30.4 bits (67), Expect(2) = 8e-04
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -3
Query: 492 FVDTAVGYGRETRSYVEISQSLGVDKSSDILFVTDVFQEA 373
+ DT VG+ +E +SY I++ L D ILF+TD+ EA
Sbjct: 168 YFDTHVGHKQEQQSYKNIAKQLKED-PKQILFLTDIPGEA 206
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,173,340
Number of Sequences: 1393205
Number of extensions: 8767960
Number of successful extensions: 16871
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 16573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16870
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
