Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011598A_C01 KMC011598A_c01
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK69306.1|AF380358_1 AG9C5 [Gallus gallus] gi|21666287|gb|AA... 35 0.72
ref|NP_701830.1| hypothetical protein [Plasmodium falciparum 3D7... 33 2.1
gb|AAM51130.1| SD24632p [Drosophila melanogaster] 33 2.1
gb|AAK15392.1| valyl-tRNA synthetase [Candidatus Carsonella ruddii] 33 2.1
ref|NP_609101.1| CG4496-PA [Drosophila melanogaster] gi|7297225|... 33 2.1
>gb|AAK69306.1|AF380358_1 AG9C5 [Gallus gallus] gi|21666287|gb|AAM73640.1|AF389351_1 FIP-2
[Gallus gallus]
Length = 556
Score = 34.7 bits (78), Expect = 0.72
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 362 MSDLYKKMESSKEKQKKEKPFCEHEFLHLEKCCLCK-FQPEELQSMRHAM 508
M D Y+++ +EKQK+E+ F E +F ++C L K + E+LQ ++
Sbjct: 65 MKDRYEELSIWREKQKEEREFYETKFKEAKQCLLAKCVENEQLQQQLQSL 114
>ref|NP_701830.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497003|gb|AAN36554.1|AE014851_73 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 672
Score = 33.1 bits (74), Expect = 2.1
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Frame = -2
Query: 473 GIYINSISQDEGIHVHRMAFL---------FFVFLYCFPFSCTNRSYLFEECYQRTLLST 321
G N++S + G H H+ ++ + FLY F F N SY F+ C LLS
Sbjct: 457 GYMYNTLSTN-GCHKHKYIYIQHFYITLNNIYTFLYFFKFLYENNSYYFKNCKHNFLLS- 514
Query: 320 LSNTLHVTDLFFKKLTHFLSLAKEFVDFSKH 228
+H + L T + + + SKH
Sbjct: 515 ----IHKSQLLIFFYTFWSYIFDILLYISKH 541
>gb|AAM51130.1| SD24632p [Drosophila melanogaster]
Length = 582
Score = 33.1 bits (74), Expect = 2.1
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -2
Query: 386 PFSCTNRSYLFEECYQRTLLSTLSNTL--HVTDLFFKKLTHFLSLAKEFVDFSKHKINHY 213
PFSC+ F EC STL + HV D ++K L S ++++++S HK NH
Sbjct: 460 PFSCSKCRKPFREC------STLKKHMVTHVRDRWYKCL-RCPSKFRDYLEYSDHKNNHQ 512
Query: 212 D 210
D
Sbjct: 513 D 513
>gb|AAK15392.1| valyl-tRNA synthetase [Candidatus Carsonella ruddii]
Length = 284
Score = 33.1 bits (74), Expect = 2.1
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 56 HQNIYIENVMKLKADMIYKTSKLSFFLSENK 148
++NI+I N+ ++YK ++FFL++NK
Sbjct: 137 YKNIFINNISSTNVKIVYKNKNINFFLNKNK 167
>ref|NP_609101.1| CG4496-PA [Drosophila melanogaster] gi|7297225|gb|AAF52490.1|
CG4496-PA [Drosophila melanogaster]
Length = 580
Score = 33.1 bits (74), Expect = 2.1
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -2
Query: 386 PFSCTNRSYLFEECYQRTLLSTLSNTL--HVTDLFFKKLTHFLSLAKEFVDFSKHKINHY 213
PFSC+ F EC STL + HV D ++K L S ++++++S HK NH
Sbjct: 458 PFSCSKCRKPFREC------STLKKHMVTHVRDRWYKCL-RCPSKFRDYLEYSDHKNNHQ 510
Query: 212 D 210
D
Sbjct: 511 D 511
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 436,115,305
Number of Sequences: 1393205
Number of extensions: 8757330
Number of successful extensions: 31384
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 29411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31230
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
