Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011592A_C01 KMC011592A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42388.1| unknown protein [Arabidopsis thaliana] 100 2e-20
ref|NP_564080.1| expressed protein; protein id: At1g19340.1, sup... 100 2e-20
gb|AAM61513.1| unknown [Arabidopsis thaliana] 100 2e-20
gb|AAF79421.1|AC025808_3 F18O14.6 [Arabidopsis thaliana] 100 2e-20
ref|XP_135413.2| RIKEN cDNA 2410198H06 [Mus musculus] 62 5e-09
>dbj|BAC42388.1| unknown protein [Arabidopsis thaliana]
Length = 214
Score = 100 bits (248), Expect = 2e-20
Identities = 44/67 (65%), Positives = 53/67 (78%)
Frame = -2
Query: 578 FKPLKDDHVIMSIPGDYSRKPPIEDLLRDYVPGLKHPRCIELFAREVMAEWVAWGNEPLH 399
FK L + +IMSIPGD+SRKPPI D+L + PG + RC+ELFARE+ A W +WGNEPLH
Sbjct: 145 FKLLDKNQIIMSIPGDFSRKPPIGDILLKHTPGSQPARCLELFAREMAAGWTSWGNEPLH 204
Query: 398 FQDSRYF 378
FQDSRYF
Sbjct: 205 FQDSRYF 211
>ref|NP_564080.1| expressed protein; protein id: At1g19340.1, supported by cDNA:
122669. [Arabidopsis thaliana]
Length = 414
Score = 100 bits (248), Expect = 2e-20
Identities = 44/67 (65%), Positives = 53/67 (78%)
Frame = -2
Query: 578 FKPLKDDHVIMSIPGDYSRKPPIEDLLRDYVPGLKHPRCIELFAREVMAEWVAWGNEPLH 399
FK L + +IMSIPGD+SRKPPI D+L + PG + RC+ELFARE+ A W +WGNEPLH
Sbjct: 345 FKLLDKNQIIMSIPGDFSRKPPIGDILLKHTPGSQPARCLELFAREMAAGWTSWGNEPLH 404
Query: 398 FQDSRYF 378
FQDSRYF
Sbjct: 405 FQDSRYF 411
>gb|AAM61513.1| unknown [Arabidopsis thaliana]
Length = 414
Score = 100 bits (248), Expect = 2e-20
Identities = 44/67 (65%), Positives = 53/67 (78%)
Frame = -2
Query: 578 FKPLKDDHVIMSIPGDYSRKPPIEDLLRDYVPGLKHPRCIELFAREVMAEWVAWGNEPLH 399
FK L + +IMSIPGD+SRKPPI D+L + PG + RC+ELFARE+ A W +WGNEPLH
Sbjct: 345 FKLLDKNQIIMSIPGDFSRKPPIGDILLKHTPGSQPARCLELFAREMAAGWTSWGNEPLH 404
Query: 398 FQDSRYF 378
FQDSRYF
Sbjct: 405 FQDSRYF 411
>gb|AAF79421.1|AC025808_3 F18O14.6 [Arabidopsis thaliana]
Length = 403
Score = 100 bits (248), Expect = 2e-20
Identities = 44/67 (65%), Positives = 53/67 (78%)
Frame = -2
Query: 578 FKPLKDDHVIMSIPGDYSRKPPIEDLLRDYVPGLKHPRCIELFAREVMAEWVAWGNEPLH 399
FK L + +IMSIPGD+SRKPPI D+L + PG + RC+ELFARE+ A W +WGNEPLH
Sbjct: 334 FKLLDKNQIIMSIPGDFSRKPPIGDILLKHTPGSQPARCLELFAREMAAGWTSWGNEPLH 393
Query: 398 FQDSRYF 378
FQDSRYF
Sbjct: 394 FQDSRYF 400
>ref|XP_135413.2| RIKEN cDNA 2410198H06 [Mus musculus]
Length = 269
Score = 62.0 bits (149), Expect = 5e-09
Identities = 31/67 (46%), Positives = 45/67 (66%), Gaps = 2/67 (2%)
Frame = -2
Query: 572 PLKDDHVIMSIPGD-YSRKPPIEDLLRDYV-PGLKHPRCIELFAREVMAEWVAWGNEPLH 399
P+ D +I+S+P +S KPP+ ++LRDY+ PG +C+ELFAR + W++WGNE L
Sbjct: 199 PVPDQKLIVSVPCVLHSHKPPLTEVLRDYIKPG---GQCLELFARNLQPGWMSWGNEVLK 255
Query: 398 FQDSRYF 378
FQ YF
Sbjct: 256 FQHMDYF 262
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,320,104
Number of Sequences: 1393205
Number of extensions: 10848679
Number of successful extensions: 26116
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 25441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26111
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
