Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011586A_C01 KMC011586A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK16173.1|AC079887_5 hypothetical protein [Oryza sativa] gi|... 127 3e-43
dbj|BAB01813.1| gene_id:MXO21.1~unknown protein [Arabidopsis tha... 112 3e-36
ref|NP_189563.1| hypothetical protein; protein id: At3g29185.1 [... 130 1e-29
ref|NP_485796.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 36 0.37
ref|NP_688361.1| carbamoyl-phosphate synthase, small subunit [St... 35 0.63
>gb|AAK16173.1|AC079887_5 hypothetical protein [Oryza sativa]
gi|14488354|gb|AAK63921.1|AC084282_2 unknown protein
[Oryza sativa (japonica cultivar-group)]
Length = 405
Score = 127 bits (318), Expect(2) = 3e-43
Identities = 60/91 (65%), Positives = 72/91 (78%)
Frame = -1
Query: 556 RITPFIGKWKGHSMTKRSGVYGSTIAEADTVVLHEMDSNGQLIQDVTSTSHGENVTTTNV 377
RI P +G+W+G S+TKRSGVYG+T++EADTVVL E D NGQLI D ST G + TTT V
Sbjct: 266 RIAPLLGRWEGRSVTKRSGVYGATLSEADTVVLLEKDRNGQLILDNMSTKSGSS-TTTTV 324
Query: 376 HWTGAISENLVTFDGGYQMILLPGGMYMGCP 284
HWTG+ + NL+ FDGGY+M LLPGGMYMG P
Sbjct: 325 HWTGSANNNLLQFDGGYEMTLLPGGMYMGYP 355
Score = 70.1 bits (170), Expect(2) = 3e-43
Identities = 32/46 (69%), Positives = 36/46 (77%)
Frame = -3
Query: 269 KAVAQSKSFHLEFCWLETPDKRPRLVRTYDVEGLAVSSTYFLETRL 132
K V SFHLEFCW+E+P KR RLVRTYD GLAVSSTYF ET++
Sbjct: 360 KIVNDMDSFHLEFCWMESPGKRQRLVRTYDSAGLAVSSTYFFETKV 405
>dbj|BAB01813.1| gene_id:MXO21.1~unknown protein [Arabidopsis thaliana]
Length = 374
Score = 112 bits (281), Expect(2) = 3e-36
Identities = 53/84 (63%), Positives = 67/84 (79%)
Frame = -1
Query: 556 RITPFIGKWKGHSMTKRSGVYGSTIAEADTVVLHEMDSNGQLIQDVTSTSHGENVTTTNV 377
RI PF+G WKG S+TKRSGVYG+T++EADTV + EM+ GQ++QD++STS E TTNV
Sbjct: 257 RINPFLGTWKGRSVTKRSGVYGATLSEADTVAVLEMNDKGQVVQDISSTS-DEKKVTTNV 315
Query: 376 HWTGAISENLVTFDGGYQMILLPG 305
HW G +S++LVTF GYQM LLPG
Sbjct: 316 HWEGKMSKDLVTFAEGYQMTLLPG 339
Score = 60.8 bits (146), Expect(2) = 3e-36
Identities = 26/35 (74%), Positives = 30/35 (85%)
Frame = -3
Query: 236 EFCWLETPDKRPRLVRTYDVEGLAVSSTYFLETRL 132
EFCWLE+P R RL+RTYD EGLAVSSTYF ET++
Sbjct: 340 EFCWLESPSSRQRLIRTYDHEGLAVSSTYFTETKM 374
>ref|NP_189563.1| hypothetical protein; protein id: At3g29185.1 [Arabidopsis
thaliana]
Length = 433
Score = 130 bits (326), Expect = 1e-29
Identities = 60/91 (65%), Positives = 74/91 (80%)
Frame = -1
Query: 556 RITPFIGKWKGHSMTKRSGVYGSTIAEADTVVLHEMDSNGQLIQDVTSTSHGENVTTTNV 377
RI PF+G WKG S+TKRSGVYG+T++EADTV + EM+ GQ++QD++STS E TTNV
Sbjct: 294 RINPFLGTWKGRSVTKRSGVYGATLSEADTVAVLEMNDKGQVVQDISSTS-DEKKVTTNV 352
Query: 376 HWTGAISENLVTFDGGYQMILLPGGMYMGCP 284
HW G +S++LVTF GYQM LLPGGMYMGCP
Sbjct: 353 HWEGKMSKDLVTFAEGYQMTLLPGGMYMGCP 383
Score = 77.0 bits (188), Expect = 1e-13
Identities = 41/76 (53%), Positives = 48/76 (62%), Gaps = 10/76 (13%)
Frame = -3
Query: 329 LSDDTFTWWHVYGMSL----------CM*PKAVAQSKSFHLEFCWLETPDKRPRLVRTYD 180
+S D T+ Y M+L C K VA KSFHLEFCWLE+P R RL+RTYD
Sbjct: 358 MSKDLVTFAEGYQMTLLPGGMYMGCPCDVSKCVADLKSFHLEFCWLESPSSRQRLIRTYD 417
Query: 179 VEGLAVSSTYFLETRL 132
EGLAVSSTYF ET++
Sbjct: 418 HEGLAVSSTYFTETKM 433
>ref|NP_485796.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25333481|pir||AF2025
hypothetical protein all1756 [imported] - Nostoc sp.
(strain PCC 7120) gi|17130846|dbj|BAB73455.1|
ORF_ID:all1756~hypothetical protein [Nostoc sp. PCC
7120]
Length = 273
Score = 35.8 bits (81), Expect = 0.37
Identities = 21/47 (44%), Positives = 26/47 (54%)
Frame = -3
Query: 272 PKAVAQSKSFHLEFCWLETPDKRPRLVRTYDVEGLAVSSTYFLETRL 132
P V +SF LE WL P+ R R+VR+Y +G VS T E RL
Sbjct: 222 PLKVQVRQSFILEVGWLIQPNLRQRMVRSYSDKGEWVSLTLVTEQRL 268
>ref|NP_688361.1| carbamoyl-phosphate synthase, small subunit [Streptococcus
agalactiae 2603V/R] gi|25011475|ref|NP_735870.1| Similar
to carbamoyl-phosphate synthase, small subunit
[Streptococcus agalactiae NEM316]
gi|22534390|gb|AAN00234.1|AE014254_14
carbamoyl-phosphate synthase, small subunit
[Streptococcus agalactiae 2603V/R]
gi|24413013|emb|CAD47092.1| Similar to
carbamoyl-phosphate synthase, small subunit
[Streptococcus agalactiae NEM316]
Length = 356
Score = 35.0 bits (79), Expect = 0.63
Identities = 23/67 (34%), Positives = 34/67 (50%)
Frame = -1
Query: 511 KRSGVYGSTIAEADTVVLHEMDSNGQLIQDVTSTSHGENVTTTNVHWTGAISENLVTFDG 332
K G +T+AEA V+ H D QLI V T++ E V+T + + A N+V D
Sbjct: 122 KEKGFVKATLAEAGDVLSHLQD---QLIATVLPTNNVEQVSTKTAYPSPASGRNIVVLDF 178
Query: 331 GYQMILL 311
G + +L
Sbjct: 179 GLKHSIL 185
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,900,091
Number of Sequences: 1393205
Number of extensions: 11249348
Number of successful extensions: 24517
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 23751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24491
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
