Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011579A_C01 KMC011579A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN17436.1| Unknown protein [Arabidopsis thaliana] gi|2489974... 100 1e-20
ref|NP_564865.1| expressed protein; protein id: At1g66070.1, sup... 96 4e-19
gb|EAA32851.1| predicted protein [Neurospora crassa] 41 0.009
gb|EAA27678.1| hypothetical protein [Neurospora crassa] 37 0.21
ref|NP_491654.1| CBF1 interacting corepressor (65.8 kD) [Caenorh... 35 0.62
>gb|AAN17436.1| Unknown protein [Arabidopsis thaliana] gi|24899745|gb|AAN65087.1|
Unknown protein [Arabidopsis thaliana]
gi|26451768|dbj|BAC42979.1| unknown protein [Arabidopsis
thaliana]
Length = 225
Score = 100 bits (249), Expect = 1e-20
Identities = 51/65 (78%), Positives = 58/65 (88%)
Frame = -3
Query: 555 SLKGADAKDIASSITAIANEKIKAEKEAHAGKKKTGGKKKQLNVDKPDDDIVSDRYDAMD 376
++K AD KD+ASSITAIANEK+KAEKEA AGKKK+ GKKKQL+VDKPDDD+VS YDAMD
Sbjct: 162 NMKAADVKDVASSITAIANEKLKAEKEAAAGKKKS-GKKKQLHVDKPDDDLVSGPYDAMD 220
Query: 375 DYDFM 361
D DFM
Sbjct: 221 DDDFM 225
>ref|NP_564865.1| expressed protein; protein id: At1g66070.1, supported by cDNA:
20812., supported by cDNA: gi_17380827, supported by
cDNA: gi_20259026 [Arabidopsis thaliana]
gi|25404579|pir||C96685 unknown protein F15E12.10
[imported] - Arabidopsis thaliana
gi|12322607|gb|AAG51301.1|AC026480_8 unknown protein
[Arabidopsis thaliana] gi|17380828|gb|AAL36101.1|
unknown protein [Arabidopsis thaliana]
gi|20259027|gb|AAM14229.1| unknown protein [Arabidopsis
thaliana]
Length = 226
Score = 95.5 bits (236), Expect = 4e-19
Identities = 48/65 (73%), Positives = 56/65 (85%)
Frame = -3
Query: 555 SLKGADAKDIASSITAIANEKIKAEKEAHAGKKKTGGKKKQLNVDKPDDDIVSDRYDAMD 376
++K AD KD+ASSIT IANEK+KAEKEA AGKKK GGKKKQL VDK +DD+V+ YDAMD
Sbjct: 163 NMKAADVKDVASSITTIANEKLKAEKEAAAGKKK-GGKKKQLIVDKANDDLVAGPYDAMD 221
Query: 375 DYDFM 361
D+DFM
Sbjct: 222 DFDFM 226
>gb|EAA32851.1| predicted protein [Neurospora crassa]
Length = 274
Score = 41.2 bits (95), Expect = 0.009
Identities = 24/64 (37%), Positives = 34/64 (52%), Gaps = 1/64 (1%)
Frame = -3
Query: 552 LKGADAKDIASSITAIANEKIKAEKEAH-AGKKKTGGKKKQLNVDKPDDDIVSDRYDAMD 376
LK + K IAS++TA++NEK+K EK A GKK K K +++ +D D
Sbjct: 205 LKSDEIKKIASTLTALSNEKLKEEKAAEKGGKKSKAAKTKTSLAGVGRGGAIAEAHDTYD 264
Query: 375 DYDF 364
D F
Sbjct: 265 DDAF 268
>gb|EAA27678.1| hypothetical protein [Neurospora crassa]
Length = 482
Score = 36.6 bits (83), Expect = 0.21
Identities = 24/49 (48%), Positives = 29/49 (58%), Gaps = 5/49 (10%)
Frame = -3
Query: 498 EKIKAEKEAHAGKKKTGGKKKQLNVDKPDDDI-----VSDRYDAMDDYD 367
EK KAEK AH KK TGGK K + D+ + D+ SD YDA D +D
Sbjct: 392 EKKKAEKAAH--KKATGGKGKDDSDDEDEMDMDDYPYDSDMYDAEDGFD 438
>ref|NP_491654.1| CBF1 interacting corepressor (65.8 kD) [Caenorhabditis elegans]
gi|7504320|pir||T29586 hypothetical protein F55F8.4 -
Caenorhabditis elegans gi|1707048|gb|AAB37808.1|
Hypothetical protein F55F8.4 [Caenorhabditis elegans]
Length = 560
Score = 35.0 bits (79), Expect = 0.62
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = -3
Query: 552 LKGADAKDIASSITAIANEKIKAEKEAHAGKKKTGGKKKQLNVDKPDDDIVSDRYDAMDD 373
+ GAD +D+ + +K K EK + KKK K K+ + DDD SD D+ DD
Sbjct: 260 MSGADLEDVMKKKSKKEKKKEKKEKRKNKDKKKDKKKNKKSKSRETDDD--SDGSDSEDD 317
Query: 372 Y 370
+
Sbjct: 318 W 318
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,713,336
Number of Sequences: 1393205
Number of extensions: 8642610
Number of successful extensions: 46383
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 44869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46299
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
