Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011556A_C01 KMC011556A_c01
(487 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65138.1| succinyl-CoA ligase beta subunit [Arabidopsis tha... 130 3e-40
ref|NP_179632.1| succinyl-CoA ligase beta subunit; protein id: A... 130 3e-40
gb|AAO22150.1| succinyl CoA ligase beta subunit [Lycopersicon es... 118 6e-36
sp|P53587|SUCB_NEOFR Succinyl-CoA ligase [GDP-forming] beta-chai... 47 1e-09
gb|AAO52473.1| similar to Sus scrofa (Pig). Succinyl-CoA ligase ... 48 2e-09
>gb|AAM65138.1| succinyl-CoA ligase beta subunit [Arabidopsis thaliana]
Length = 421
Score = 130 bits (326), Expect(2) = 3e-40
Identities = 64/87 (73%), Positives = 76/87 (86%)
Frame = +3
Query: 129 VRGLLNKLVSRSLSVAGKSQNQQLRRLNIHEYQGAELMSKYGVNVPRGVAVSSVEETRKA 308
+RGL+NKLVSRSLS++GK QNQQLRRLNIHEYQGAELM KYGVNVP+GVA SS+EE +KA
Sbjct: 1 MRGLVNKLVSRSLSISGKWQNQQLRRLNIHEYQGAELMGKYGVNVPKGVAASSLEEVKKA 60
Query: 309 IKDVFPGQNELVVKSQIVGWWTRIGNF 389
I+DVFP ++ELVVKSQI+ +G F
Sbjct: 61 IQDVFPNESELVVKSQILAGGRGLGTF 87
Score = 56.6 bits (135), Expect(2) = 3e-40
Identities = 26/31 (83%), Positives = 29/31 (92%)
Frame = +2
Query: 395 SGLKGGVHIVKTDQVEDIAGKMLGQILVTKQ 487
SGLKGGVHIVK D+ E+IAGKMLGQ+LVTKQ
Sbjct: 89 SGLKGGVHIVKRDEAEEIAGKMLGQVLVTKQ 119
>ref|NP_179632.1| succinyl-CoA ligase beta subunit; protein id: At2g20420.1,
supported by cDNA: 36904., supported by cDNA:
gi_20466481 [Arabidopsis thaliana]
gi|21264030|sp|O82662|SUCB_ARATH Succinyl-CoA ligase
[GDP-forming] beta-chain, mitochondrial precursor
(Succinyl-CoA synthetase, beta chain) (SCS-beta)
gi|11272036|pir||T51809 succinate-CoA ligase
(ADP-forming) (EC 6.2.1.5) beta chain [imported] -
Arabidopsis thaliana gi|3660469|emb|CAA05024.1|
succinyl-CoA-ligase beta subunit [Arabidopsis thaliana]
gi|20197853|gb|AAM15283.1| succinyl-CoA ligase beta
subunit [Arabidopsis thaliana]
gi|20466482|gb|AAM20558.1| succinyl-CoA ligase beta
subunit [Arabidopsis thaliana]
gi|22136422|gb|AAM91289.1| succinyl-CoA ligase beta
subunit [Arabidopsis thaliana]
Length = 421
Score = 130 bits (326), Expect(2) = 3e-40
Identities = 64/87 (73%), Positives = 76/87 (86%)
Frame = +3
Query: 129 VRGLLNKLVSRSLSVAGKSQNQQLRRLNIHEYQGAELMSKYGVNVPRGVAVSSVEETRKA 308
+RGL+NKLVSRSLS++GK QNQQLRRLNIHEYQGAELM KYGVNVP+GVA SS+EE +KA
Sbjct: 1 MRGLVNKLVSRSLSISGKWQNQQLRRLNIHEYQGAELMGKYGVNVPKGVAASSLEEVKKA 60
Query: 309 IKDVFPGQNELVVKSQIVGWWTRIGNF 389
I+DVFP ++ELVVKSQI+ +G F
Sbjct: 61 IQDVFPNESELVVKSQILAGGRGLGTF 87
Score = 56.6 bits (135), Expect(2) = 3e-40
Identities = 26/31 (83%), Positives = 29/31 (92%)
Frame = +2
Query: 395 SGLKGGVHIVKTDQVEDIAGKMLGQILVTKQ 487
SGLKGGVHIVK D+ E+IAGKMLGQ+LVTKQ
Sbjct: 89 SGLKGGVHIVKRDEAEEIAGKMLGQVLVTKQ 119
>gb|AAO22150.1| succinyl CoA ligase beta subunit [Lycopersicon esculentum]
Length = 417
Score = 118 bits (296), Expect(2) = 6e-36
Identities = 57/84 (67%), Positives = 72/84 (84%)
Frame = +3
Query: 138 LLNKLVSRSLSVAGKSQNQQLRRLNIHEYQGAELMSKYGVNVPRGVAVSSVEETRKAIKD 317
+L KL ++SLSVAGK Q QQLRRLNIHEYQGAELMSKYG+NVP+GVAV+S++E +KAI+D
Sbjct: 1 MLRKLANQSLSVAGKWQQQQLRRLNIHEYQGAELMSKYGINVPKGVAVASLDEVKKAIQD 60
Query: 318 VFPGQNELVVKSQIVGWWTRIGNF 389
VFP Q+E+VVKSQ++ +G F
Sbjct: 61 VFPNQSEVVVKSQVLAGGRGLGTF 84
Score = 53.5 bits (127), Expect(2) = 6e-36
Identities = 25/31 (80%), Positives = 27/31 (86%)
Frame = +2
Query: 395 SGLKGGVHIVKTDQVEDIAGKMLGQILVTKQ 487
+G +GGVHIVK DQ EDIA KMLGQILVTKQ
Sbjct: 86 NGFQGGVHIVKADQAEDIASKMLGQILVTKQ 116
>sp|P53587|SUCB_NEOFR Succinyl-CoA ligase [GDP-forming] beta-chain, hydrogenosomal
precursor (Succinyl-CoA synthetase, beta chain)
(SCS-beta) gi|4688953|emb|CAB41451.1| beta-succinyl CoA
synthetase precursor [Neocallimastix frontalis]
Length = 437
Score = 47.4 bits (111), Expect(2) = 1e-09
Identities = 24/74 (32%), Positives = 42/74 (56%)
Frame = +3
Query: 168 SVAGKSQNQQLRRLNIHEYQGAELMSKYGVNVPRGVAVSSVEETRKAIKDVFPGQNELVV 347
++A +Q Q R L++HEY L+ +Y VN P+G+ + EE +A K + +LV+
Sbjct: 15 ALASIAQTAQKRFLSVHEYCSMNLLHEYNVNAPKGIVAKTPEEAYQAAKKL--NTEDLVI 72
Query: 348 KSQIVGWWTRIGNF 389
K+Q++ G+F
Sbjct: 73 KAQVLAGGRGKGHF 86
Score = 36.2 bits (82), Expect(2) = 1e-09
Identities = 19/32 (59%), Positives = 24/32 (74%), Gaps = 1/32 (3%)
Frame = +2
Query: 395 SGLKGGVHIVKT-DQVEDIAGKMLGQILVTKQ 487
SGL+GGV + T +QV+D A KMLG L+TKQ
Sbjct: 88 SGLQGGVKLCYTPEQVKDYASKMLGHKLITKQ 119
>gb|AAO52473.1| similar to Sus scrofa (Pig). Succinyl-CoA ligase [GDP-forming]
beta-chain, mitochondrial precursor (EC 6.2.1.4)
(Succinyl-CoA synthetase, beta chain) (SCS-beta)
[Dictyostelium discoideum]
Length = 420
Score = 48.1 bits (113), Expect(2) = 2e-09
Identities = 26/66 (39%), Positives = 37/66 (55%)
Frame = +3
Query: 195 QLRRLNIHEYQGAELMSKYGVNVPRGVAVSSVEETRKAIKDVFPGQNELVVKSQIVGWWT 374
Q+R LN+HEYQ LM KYGVN + V+ + KA ++ ELVVK+Q+
Sbjct: 23 QVRYLNLHEYQSKSLMDKYGVNTQKWRVVTKASDAIKAASEL---NGELVVKAQVHAGGR 79
Query: 375 RIGNFV 392
G+F+
Sbjct: 80 GKGSFI 85
Score = 34.3 bits (77), Expect(2) = 2e-09
Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +2
Query: 395 SGLKGGVHIVKT-DQVEDIAGKMLGQILVTKQ 487
+G KGGVH+ KT + E + +MLG+ LVTKQ
Sbjct: 87 TGFKGGVHLCKTGKEAERLCDEMLGKHLVTKQ 118
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 425,720,374
Number of Sequences: 1393205
Number of extensions: 9518299
Number of successful extensions: 42484
Number of sequences better than 10.0: 175
Number of HSP's better than 10.0 without gapping: 37879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41955
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
