Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011555A_C01 KMC011555A_c01
(628 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197426.1| putative protein; protein id: At5g19250.1 [Arab... 64 2e-09
ref|NP_566267.1| Expressed protein; protein id: At3g06035.1, sup... 52 5e-06
gb|AAM65942.1| unknown [Arabidopsis thaliana] 52 6e-06
ref|NP_564669.1| expressed protein; protein id: At1g54860.1, sup... 52 8e-06
ref|NP_197424.1| putative protein; protein id: At5g19230.1 [Arab... 48 9e-05
>ref|NP_197426.1| putative protein; protein id: At5g19250.1 [Arabidopsis thaliana]
Length = 196
Score = 63.5 bits (153), Expect = 2e-09
Identities = 34/65 (52%), Positives = 43/65 (65%)
Frame = -2
Query: 627 DSKYTGIGIGSEDNWIVVVLTTDTSGGSFVPEAGSGSSDDTANLLSQIGLVYCSMLLLVG 448
DSK+TGIGIGS+DNWIVVVLTT T GS+ P + SG+ N GLV S++ L+
Sbjct: 137 DSKFTGIGIGSDDNWIVVVLTTSTPEGSYSPASNSGAFAFGVN-----GLVSSSLMFLLF 191
Query: 447 SVFLF 433
F+F
Sbjct: 192 CFFMF 196
>ref|NP_566267.1| Expressed protein; protein id: At3g06035.1, supported by cDNA:
6490. [Arabidopsis thaliana]
Length = 200
Score = 52.4 bits (124), Expect = 5e-06
Identities = 28/65 (43%), Positives = 39/65 (59%)
Frame = -2
Query: 627 DSKYTGIGIGSEDNWIVVVLTTDTSGGSFVPEAGSGSSDDTANLLSQIGLVYCSMLLLVG 448
DSK+TGIGIG ED+WIVVVLTT+T GS+ + + ++ IGLV ++ +
Sbjct: 136 DSKFTGIGIGKEDDWIVVVLTTNTPEGSY--STATPTKQESNGFTFGIGLVSYLVIFMYS 193
Query: 447 SVFLF 433
S F
Sbjct: 194 SFCFF 198
>gb|AAM65942.1| unknown [Arabidopsis thaliana]
Length = 200
Score = 52.0 bits (123), Expect = 6e-06
Identities = 27/65 (41%), Positives = 39/65 (59%)
Frame = -2
Query: 627 DSKYTGIGIGSEDNWIVVVLTTDTSGGSFVPEAGSGSSDDTANLLSQIGLVYCSMLLLVG 448
DSK+TGIGIG ED+WIVVVLTT+T GS+ + + ++ +GLV ++ +
Sbjct: 136 DSKFTGIGIGKEDDWIVVVLTTNTPEGSY--STATPTKQESNGFTFGVGLVSYLVIFMYS 193
Query: 447 SVFLF 433
S F
Sbjct: 194 SFCFF 198
>ref|NP_564669.1| expressed protein; protein id: At1g54860.1, supported by cDNA:
1530. [Arabidopsis thaliana] gi|3776578|gb|AAC64895.1|
ESTs gb|F13915 and gb|F13916 come from this gene.
[Arabidopsis thaliana]
gi|12322170|gb|AAG51126.1|AC069144_23 unknown protein
[Arabidopsis thaliana] gi|21553603|gb|AAM62696.1|
unknown [Arabidopsis thaliana]
gi|28392879|gb|AAO41876.1| unknown protein [Arabidopsis
thaliana] gi|28827272|gb|AAO50480.1| unknown protein
[Arabidopsis thaliana]
Length = 200
Score = 51.6 bits (122), Expect = 8e-06
Identities = 25/59 (42%), Positives = 36/59 (60%), Gaps = 2/59 (3%)
Frame = -2
Query: 627 DSKYTGIGIGSEDNWIVVVLTTDTSGGSFVPEAGSGSSDDTANL--LSQIGLVYCSMLL 457
DS+Y G G+GSE W+VVVLTT T GGSF +G + + L +GL++ ++L
Sbjct: 141 DSRYVGAGVGSEKEWMVVVLTTSTPGGSFTAGVAAGKATSVRVMAGLGLMGLLFSCLVL 199
>ref|NP_197424.1| putative protein; protein id: At5g19230.1 [Arabidopsis thaliana]
gi|27311585|gb|AAO00758.1| putative protein [Arabidopsis
thaliana]
Length = 189
Score = 48.1 bits (113), Expect = 9e-05
Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Frame = -2
Query: 627 DSKYTGIGIGSEDNWIVVVLTTDT--SGGSFVPEAGSGSSDDTANLLSQIGLVYCSMLLL 454
DSK TGIGIGS D W+VV+LTT+T G S + SG+ N GLV S L L
Sbjct: 128 DSKITGIGIGSGDIWVVVILTTNTPEGGYSLLTTTNSGAYAFGVN-----GLVSSSFLFL 182
Query: 453 VGSVFLF 433
+ F+F
Sbjct: 183 LFCFFMF 189
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,388,912
Number of Sequences: 1393205
Number of extensions: 10571377
Number of successful extensions: 27039
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 26132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27023
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
