Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011552A_C01 KMC011552A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_013069.1| Glycosylphosphatidylinositol (GPI) biosynthesis... 33 2.5
ref|NP_701839.1| dimethyladenosine transferase, putative [Plasmo... 33 2.5
ref|NP_064775.1| Hypothetical protein [Amsacta moorei entomopoxv... 32 4.3
ref|XP_287266.1| hypothetical protein XP_287266 [Mus musculus] 31 7.3
ref|NP_784539.1| chloride channel protein [Lactobacillus plantar... 31 9.6
>ref|NP_013069.1| Glycosylphosphatidylinositol (GPI) biosynthesis; Gpi13p
[Saccharomyces cerevisiae] gi|2132652|pir||S64782
probable membrane protein YLL031c - yeast (Saccharomyces
cerevisiae) gi|1360216|emb|CAA97480.1| ORF YLL031c
[Saccharomyces cerevisiae]
Length = 1017
Score = 32.7 bits (73), Expect = 2.5
Identities = 25/79 (31%), Positives = 35/79 (43%), Gaps = 10/79 (12%)
Frame = -2
Query: 449 YCTSINCQALISWW*KYYLMQHVTLTFMYKYLNKKKNVMLQFAVPF----------LACE 300
Y + + QA W +L + L F+Y L +N A+PF LA
Sbjct: 706 YNLTSSYQAAAPIWINVFLKGILGLNFVYWSLTSLENNSAVIAIPFLRDVTIFKFTLARI 765
Query: 299 VAPFSLIWSQVVLSLGPIC 243
+A FSLI S V +GP+C
Sbjct: 766 IAGFSLIASNVGWLMGPLC 784
>ref|NP_701839.1| dimethyladenosine transferase, putative [Plasmodium falciparum 3D7]
gi|23497013|gb|AAN36563.1|AE014852_7 dimethyladenosine
transferase, putative [Plasmodium falciparum 3D7]
Length = 639
Score = 32.7 bits (73), Expect = 2.5
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -2
Query: 161 IFKGHCSYFTHVKCNE*NAPSIFIIKYQSILK*LNANLEPLLFTVPYPTL 12
IFK H SY+ H+ CN I +Q K L ++L+ LL P L
Sbjct: 542 IFKNHESYYKHINCNLLFLKKILKYSFQQRRKKLKSSLKKLLIQYNIPKL 591
>ref|NP_064775.1| Hypothetical protein [Amsacta moorei entomopoxvirus]
gi|9964604|ref|NP_065056.1| Hypothetical protein
[Amsacta moorei entomopoxvirus]
gi|9944795|gb|AAG02978.1|AF250284_272 AMVITR06 [Amsacta
moorei entomopoxvirus] gi|9944813|gb|AAG02996.1|
AMVITR06 [Amsacta moorei entomopoxvirus]
Length = 181
Score = 32.0 bits (71), Expect = 4.3
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -2
Query: 485 CYFMSHKQLICSYCTSI--NCQALISWW*KYYLMQHVTLTFMYKYLNKKKNVML 330
C F ++ Q+IC+YC + C L + ++ + + Y+Y NKK N++L
Sbjct: 38 CMFFNNNQIICNYCKLLCSGCNKLYN----NLSIKKFSTKYGYRYENKKFNILL 87
>ref|XP_287266.1| hypothetical protein XP_287266 [Mus musculus]
Length = 95
Score = 31.2 bits (69), Expect = 7.3
Identities = 16/46 (34%), Positives = 20/46 (42%)
Frame = -1
Query: 297 CSIQPHMEPSCPKLGPYLPGESKLVAWRCLCL*AHPPRRCCV*CSY 160
C + + P CP+ GP +P CL L A P CCV Y
Sbjct: 10 CKLSANCPPKCPQQGPQVPTS-------CLPLSAPPAPACCVSTCY 48
>ref|NP_784539.1| chloride channel protein [Lactobacillus plantarum WCFS1]
gi|28270480|emb|CAD63382.1| chloride channel protein
[Lactobacillus plantarum WCFS1]
Length = 517
Score = 30.8 bits (68), Expect = 9.6
Identities = 19/45 (42%), Positives = 23/45 (50%)
Frame = -2
Query: 398 YLMQHVTLTFMYKYLNKKKNVMLQFAVPFLACEVAPFSLIWSQVV 264
YL Q+VTLT Y + L VPFL V P LIW Q++
Sbjct: 247 YLYQNVTLTMPNWYAKLRLPSWLDGLVPFLL--VIPIGLIWPQLL 289
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,853,640
Number of Sequences: 1393205
Number of extensions: 8821362
Number of successful extensions: 15869
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15862
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
